Utility of characters evolving at diverse rates of evolution to resolve quartet trees with unequal branch lengths: analytical predictions of long-branch effects

Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae

(2014) Shannon C.K. Straub et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bayesian Long Branch Attraction Bias and Corrections

(2014) Edward Susko   SYSTEMATIC BIOLOGY

Another Look at the Root of the Angiosperms Reveals a Familiar Tale

(2014) Bryan T. Drew et al.   SYSTEMATIC BIOLOGY

Maximum Likelihood Inference of Small Trees in the Presence of Long Branches

(2014) Sarah L. Parks et al.   SYSTEMATIC BIOLOGY

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

(2012) Matthew Parks et al.   BMC EVOLUTIONARY BIOLOGY

The impact and interplay of long and short branches on phylogenetic information content

(2012) Iain Martyn et al.   JOURNAL OF THEORETICAL BIOLOGY

Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi

(2012) Agathe Vialle et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic Signal and Noise: Predicting the Power of a Data Set to Resolve Phylogeny

(2012) Jeffrey P. Townsend et al.   SYSTEMATIC BIOLOGY

Systematic Error in Seed Plant Phylogenomics

(2011) Bojian Zhong et al.   Genome Biology and Evolution

Taxon Sampling and the Optimal Rates of Evolution for Phylogenetic Inference

(2011) Jeffrey P. Townsend et al.   SYSTEMATIC BIOLOGY

Automated Removal of Noisy Data in Phylogenomic Analyses

(2010) Vadim V. Goremykin et al.   JOURNAL OF MOLECULAR EVOLUTION

Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships

(2010) Jeffrey P. Townsend et al.   SYSTEMATIC BIOLOGY

Estimating trees from filtered data: Identifiability of models for morphological phylogenetics

(2009) Elizabeth S. Allman et al.   JOURNAL OF THEORETICAL BIOLOGY

Homoplasy and Clade Support

(2009) Matthew C. Brandley et al.   SYSTEMATIC BIOLOGY

Sequence length bounds for resolving a deep phylogenetic divergence

(2008) Mareike Fischer et al.   JOURNAL OF THEORETICAL BIOLOGY