Twenty years of transposable element analysis in the Arabidopsis thaliana genome

Expansion of a core regulon by transposable elements promotes Arabidopsis chemical diversity and pathogen defense

(2019) Brenden Barco et al.   Nature Communications

The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons

(2019) Rita A Batista et al.   eLife

Transcriptional control and exploitation of an immune‐responsive family of plant retrotransposons

(2018) Jérôme Zervudacki et al.   EMBO JOURNAL

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana

(2018) Zi-Wen Li et al.   Genome Biology and Evolution

Mobilization of Pack-CACTA transposons in Arabidopsis suggests the mechanism of gene shuffling

(2018) Marco Catoni et al.   NUCLEIC ACIDS RESEARCH

Impact and insights from ancient repetitive elements in plant genomes

(2016) Florian Maumus et al.   CURRENT OPINION IN PLANT BIOLOGY

The Arabidopsis thaliana mobilome and its impact at the species level

(2016) Leandro Quadrana et al.   eLife

TE-Tracker: systematic identification of transposition events through whole-genome resequencing

(2014) Arthur Gilly et al.   BMC BIOINFORMATICS

Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter

(2014) Florian Maumus et al.   PLoS One

Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana

(2014) Florian Maumus et al.   Nature Communications

The structure and retrotransposition mechanism of LTR-retrotransposons in the asexual yeastCandida albicans

(2014) Lulu Zhang et al.   Virulence

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Transposase-Derived Proteins FHY3/FAR1 Interact with PHYTOCHROME-INTERACTING FACTOR1 to Regulate Chlorophyll Biosynthesis by Modulating HEMB1 during Deetiolation in Arabidopsis

(2012) W. Tang et al.   PLANT CELL

A Gene Family Derived from Transposable Elements during Early Angiosperm Evolution Has Reproductive Fitness Benefits in Arabidopsis thaliana

(2012) Zoé Joly-Lopez et al.   PLoS Genetics

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress

(2011) Hidetaka Ito et al.   NATURE

Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

(2011) Ikhlak Ahmed et al.   NUCLEIC ACIDS RESEARCH

Major-Effect Alleles at Relatively Few Loci Underlie Distinct Vernalization and Flowering Variation in Arabidopsis Accessions

(2011) Amy Strange et al.   PLoS One

Population Genomics of Transposable Elements in Drosophila melanogaster

(2010) D. A. Petrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

A triptych of the evolution of plant transposable elements

(2010) Maud I. Tenaillon et al.   TRENDS IN PLANT SCIENCE

Chromodomains direct integration of retrotransposons to heterochromatin

(2008) X. Gao et al.   GENOME RESEARCH

Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets

(2008) Nicolas Buisine et al.   GENOMICS

Evolution and Control of Imprinted FWA Genes in the Genus Arabidopsis

(2008) Ryo Fujimoto et al.   PLoS Genetics