Early detection and classification of live bacteria using time-lapse coherent imaging and deep learning

Consistent production of chlorine-stressed bacteria from non-chlorinated secondary sewage effluents for use in the U.S. Environmental Protection Agency Alternate Test Procedure protocol

(2019) Janine R. Hutchison et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Estimate of incidence and cost of recreational waterborne illness on United States surface waters

(2018) Stephanie DeFlorio-Barker et al.   Environmental Health

Culturing the human microbiota and culturomics

(2018) Jean-Christophe Lagier et al.   NATURE REVIEWS MICROBIOLOGY

Motility-based label-free detection of parasites in bodily fluids using holographic speckle analysis and deep learning

(2018) Yibo Zhang et al.   Light-Science & Applications

Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations

(2017) Fred D. Farrell et al.   Journal of the Royal Society Interface

Edge sparsity criterion for robust holographic autofocusing

(2017) Yibo Zhang et al.   OPTICS LETTERS

Role of growth rate on the orientational alignment of Escherichia coli in a slit

(2017) Julian Sheats et al.   Royal Society Open Science

Holographic deep learning for rapid optical screening of anthrax spores

(2017) YoungJu Jo et al.   Science Advances

Monitoring of β-d-Galactosidase Activity as a Surrogate Parameter for Rapid Detection of Sewage Contamination in Urban Recreational Water

(2016) Ingun Tryland et al.   Water

Recent developments in detection and enumeration of waterborne bacteria: a retrospective minireview

(2016) Rehan A. Deshmukh et al.   MicrobiologyOpen

Computational out-of-focus imaging increases the space–bandwidth product in lens-based coherent microscopy

(2016) Hongda Wang et al.   Optica

Sparsity-based multi-height phase recovery in holographic microscopy

(2016) Yair Rivenson et al.   Scientific Reports

Optofluidic ultrahigh-throughput detection of fluorescent drops

(2015) Minkyu Kim et al.   LAB ON A CHIP

Rapid imaging, detection and quantification of Giardia lamblia cysts using mobile-phone based fluorescent microscopy and machine learning

(2015) Hatice Ceylan Koydemir et al.   LAB ON A CHIP

A rapid antimicrobial susceptibility test based on single-cell morphological analysis

(2014) J. Choi et al.   Science Translational Medicine

Rapid detection of single bacteria in unprocessed blood using Integrated Comprehensive Droplet Digital Detection

(2014) Dong-Ku Kang et al.   Nature Communications

Increased space-bandwidth product in pixel super-resolved lensfree on-chip microscopy

(2013) Alon Greenbaum et al.   Scientific Reports

Bacterial Colony from Two-Dimensional Division to Three-Dimensional Development

(2012) Pin-Tzu Su et al.   PLoS One

Aseptic Laboratory Techniques: Plating Methods

(2012) Erin R. Sanders   Jove-Journal of Visualized Experiments

Light-scattering sensor for real-time identification ofVibrio parahaemolyticus,Vibrio vulnificusandVibrio choleraecolonies on solid agar plate

(2012) Karleigh Huff et al.   Microbial Biotechnology

Lens-free optical tomographic microscope with a large imaging volume on a chip

(2011) S. O. Isikman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Automated System for Rapid Non-Destructive Enumeration of Growing Microbes

(2010) Roanna London et al.   PLoS One

Forensic identification using skin bacterial communities

(2010) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Tuberculosis Drug Resistance Mutation Database

(2009) Andreas Sandgren et al.   PLOS MEDICINE

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

(2008) Rudolf Amann et al.   NATURE REVIEWS MICROBIOLOGY