Bacterial Blight Induced Shifts in Endophytic Microbiome of Rice Leaves and the Enrichment of Specific Bacterial Strains With Pathogen Antagonism

The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

(2019) Wencong Shi et al.   Microbiome

A coumarin analogue NFA from endophytic Aspergillus fumigatus improves drought resistance in rice as an antioxidant

(2019) Wanggege Qin et al.   BMC MICROBIOLOGY

Functional Fungal Endophytes in Coleus forskohlii Regulate Labdane Diterpene Biosynthesis for Elevated Forskolin Accumulation in Roots

(2019) Anthati Mastan et al.   MICROBIAL ECOLOGY

Microbiota-mediated disease resistance in plants

(2019) Nathan Vannier et al.   PLoS Pathogens

Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes

(2019) Edward C. Rojas et al.   MICROBIAL ECOLOGY

The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars

(2018) Denver I. Walitang et al.   BMC PLANT BIOLOGY

Diversity of culturable methylotrophic bacteria in different genotypes of groundnut and their potential for plant growth promotion

(2018) R. Krishnamoorthy et al.   3 Biotech

Diversity of culturable methylotrophic bacteria in different genotypes of groundnut and their potential for plant growth promotion

(2018) R. Krishnamoorthy et al.   3 Biotech

Facilitation promotes invasions in plant‐associated microbial communities

(2018) Mei Li et al.   ECOLOGY LETTERS

Infection and Colonization of Pathogenic Fungus Fusarium proliferatum in Rice Spikelet Rot Disease

(2018) Sun Lei et al.   Rice Science

Tale of the Huanglongbing Disease Pyramid in the Context of the Citrus Microbiome

(2017) Nian Wang et al.   PHYTOPATHOLOGY

Biocontrol of Bacterial Leaf Blight of Rice and Profiling of Secondary Metabolites Produced by Rhizospheric Pseudomonas aeruginosa BRp3

(2017) Sumera Yasmin et al.   Frontiers in Microbiology

Desirable Traits of a Good Biocontrol Agent against Verticillium Wilt

(2017) Silke Deketelaere et al.   Frontiers in Microbiology

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

(2017) Yunzeng Zhang et al.   Microbiome

The Microbiome of Endophytic, Wood Colonizing Bacteria from Pine Trees as Affected by Pine Wilt Disease

(2017) Diogo Neves Proença et al.   Scientific Reports

Nitrogen removal from synthetic wastewater using single and mixed culture systems of denitrifying fungi, bacteria, and actinobacteria

(2016) Wenfeng Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fungal endophytic communities associated to the phyllosphere of grapevine cultivars under different types of management

(2016) Carla Marisa Reis Varanda et al.   Fungal Biology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Diversity of bacterial endophytes in 3 and 15 year-old grapevines of Vitis vinifera cv. Corvina and their potential for plant growth promotion and phytopathogen control

(2016) Marco Andreolli et al.   MICROBIOLOGICAL RESEARCH

Endophytic bacterial and fungal microbiota in sprouts, roots and stems of rice ( Oryza sativa L.)

(2016) Wenfeng Wang et al.   MICROBIOLOGICAL RESEARCH

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity and functional traits of culturable microbiome members, including cyanobacteria in the rice phyllosphere

(2016) S. Venkatachalam et al.   PLANT BIOLOGY

Deciphering the Bacterial Microbiome in Huanglongbing-Affected Citrus Treated with Thermotherapy and Sulfonamide Antibiotics

(2016) Chuanyu Yang et al.   PLoS One

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Microbial Community Structure in the Rhizosphere of Rice Plants

(2016) Björn Breidenbach et al.   Frontiers in Microbiology

Chloroplast Stromules Function during Innate Immunity

(2015) Jeffrey L. Caplan et al.   DEVELOPMENTAL CELL

Blocking primers reduce co-amplification of plant DNA when studying bacterial endophyte communities

(2015) Brett E. Arenz et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Mutualistic fungal endophytes produce phytohormones and organic acids that promote japonica rice plant growth under prolonged heat stress

(2015) Muhammad Waqas et al.   Journal of Zhejiang University-SCIENCE B

Potential roles for microbial endophytes in herbicide tolerance in plants

(2015) Catherine Tétard-Jones et al.   PEST MANAGEMENT SCIENCE

Bacillus oryzicola sp. nov., an Endophytic Bacterium Isolated from the Roots of Rice with Antimicrobial, Plant Growth Promoting, and Systemic Resistance Inducing Activities in Rice

(2015) Eu Jin Chung et al.   Plant Pathology Journal

Synergisms between microbial pathogens in plant disease complexes: a growing trend

(2015) Jay Ram Lamichhane et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Simultaneous Detection of Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola in Rice Seed Using a Padlock Probe-Based Assay

(2014) Yanli Tian et al.   PHYTOPATHOLOGY

Characterization of an extracellular laccase of Leptosphaerulina chartarum

(2014) Enikő Sajben-Nagy et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Southern leaf blight disease severity is correlated with decreased maize leaf epiphytic bacterial species richness and the phyllosphere bacterial diversity decline is enhanced by nitrogen fertilization

(2014) Heather C. Manching et al.   Frontiers in Plant Science

Bacteria with ACC deaminase can promote plant growth and help to feed the world

(2013) Bernard R. Glick   MICROBIOLOGICAL RESEARCH

Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars

(2013) Sang Hye Ji et al.   MICROBIOLOGICAL RESEARCH

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Identification of a Novel Fungus, Leptosphaerulina chartarum SJTU59 and Characterization of Its Xylanolytic Enzymes

(2013) Qiong Wu et al.   PLoS One

Endophytic fungi from Vitis labrusca L. ‘Niagara Rosada’) and its potential for the biological control of Fusarium oxysporum

(2012) M.C.P. Brum et al.   GENETICS AND MOLECULAR RESEARCH

A Novel Two-Component System PdeK/PdeR Regulates c-di-GMP Turnover and Virulence ofXanthomonas oryzaepv.oryzae

(2012) Fenghuan Yang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing

(2011) Kerry A Lutz et al.   BMC BIOTECHNOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Genome Sequence of Microbacterium testaceum StLB037, an N-Acylhomoserine Lactone-Degrading Bacterium Isolated from Potato Leaves

(2011) T. Morohoshi et al.   JOURNAL OF BACTERIOLOGY

Genetic and Phenotypic Diversity of Plant Growth Promoting Rhizobacteria Isolated from Sugarcane Plants Growing in Pakistan

(2011) Samina Mehnaz   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

A New Leaf Blight of Rice Caused by Pantoea ananatis in India

(2011) K. K. Mondal et al.   PLANT DISEASE

Screening, identification and evaluation of potential biocontrol fungal endophytes against Rhizoctonia solani AG3 on potato plants

(2010) Rachid Lahlali et al.   FEMS MICROBIOLOGY LETTERS

Antimicrobial endophytic fungal assemblages inhabiting bark of Taxus baccata L. of Indo-Burma mega biodiversity hotspot

(2010) K. Tayung et al.   INDIAN JOURNAL OF MICROBIOLOGY

Shifting fungal endophyte communities colonize Bouteloua gracilis: effect of host tissue and geographical distribution

(2010) José Herrera et al.   MYCOLOGIA

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Community- and Genome-Based Views of Plant-Associated Bacteria: Plant–Bacterial Interactions in Soybean and Rice

(2010) Seishi Ikeda et al.   PLANT AND CELL PHYSIOLOGY

First Report of Leaf Blight Caused by Pantoea agglomerans on Rice in Korea

(2010) H. B. Lee et al.   PLANT DISEASE

Armed and Dangerous

(2010)   SCIENCE

DNA-Dependent Detection of the Grapevine Fungal EndophytesAureobasidium pullulansandEpicoccum nigrum

(2009) M. Martini et al.   PLANT DISEASE

Detection of Aspergillus spp. and aflatoxin B1 in rice in India

(2008) K REDDY et al.   FOOD MICROBIOLOGY

Endophytic Bacteria in the Rice Plant

(2008) Hironobu Mano et al.   MICROBES AND ENVIRONMENTS

Study on the diversity of endophytic communities from rice (Oryza sativa L.) and their antagonistic activities in vitro

(2007) B. Shankar Naik et al.   MICROBIOLOGICAL RESEARCH