Updates and Comparative Analysis of the Mitochondrial Genomes of Paracoccidioides spp. Using Oxford Nanopore MinION Sequencing

The fungal mitochondrial Nad5 pan-genic intron landscape

(2019) Abdullah Zubaer et al.   Mitochondrial DNA Part A

The mitochondrial genome of Endoconidiophora resinifera is intron rich

(2018) Abdullah Zubaer et al.   Scientific Reports

Species boundaries in the human pathogen Paracoccidioides

(2017) David A. Turissini et al.   FUNGAL GENETICS AND BIOLOGY

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

(2017) Benjamin Istace et al.   GigaScience

From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity

(2016) Elizabeth Misas et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

(2016) José F. Muñoz et al.   mSphere

Mitochondrial genome evolution in yeasts: an all-encompassing view

(2015) Kelle C. Freel et al.   FEMS YEAST RESEARCH

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Update of the Dimorphic Human Pathogenic Fungi Causing Paracoccidioidomycosis

(2014) José F. Muñoz et al.   PLoS Neglected Tropical Diseases

Paracoccidioides Species Complex: Ecology, Phylogeny, Sexual Reproduction, and Virulence

(2014) Marcus M. Teixeira et al.   PLoS Pathogens

An introduction to the analysis of shotgun metagenomic data

(2014) Thomas J. Sharpton   Frontiers in Plant Science

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis

(2011) Christopher A. Desjardins et al.   PLoS Genetics

The human fungal pathogen Paracoccidioides brasiliensis (Onygenales: Ajellomycetaceae) is a complex of two species: phylogenetic evidence from five mitochondrial markers

(2010) Catalina Salgado-Salazar et al.   CLADISTICS

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

(2010) D. E. Neafsey et al.   GENOME RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Phylogenetic analysis of PRP8 intein in Paracoccidioides brasiliensis species complex

(2008) Raquel C. Theodoro et al.   FUNGAL GENETICS AND BIOLOGY

Mitochondrial function in the yeast form of the pathogenic fungus Paracoccidioides brasiliensis

(2008) Vicente P. Martins et al.   JOURNAL OF BIOENERGETICS AND BIOMEMBRANES