Characterization of Bacterial and Fungal Assemblages From Historically Contaminated Metalliferous Soils Using Metagenomics Coupled With Diffusion Chambers and Microbial Traps

Challenges of unculturable bacteria: environmental perspectives

(2020) Attila Bodor et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Genomic Characterization of a Mercury Resistant Arthrobacter sp. H-02-3 Reveals the Presence Heavy Metal and Antibiotic Resistance Determinants

(2020) Ashish Pathak et al.   Frontiers in Microbiology

Editorial: Using Genomics, Metagenomics and Other “Omics” to Assess Valuable Microbial Ecosystem Services and Novel Biotechnological Applications

(2019) Diana E. Marco et al.   Frontiers in Microbiology

A combinatorial sensor design in Caulobacter crescentus for selective environmental uranium detection

(2019) Dan Park et al.   ACS Synthetic Biology

Mercury methylating microbial communities of boreal forest soils

(2019) Jingying Xu et al.   Scientific Reports

Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA

(2019) Jaswal et al.   Genes

Determining the Reliability of Measuring Mercury Cycling Gene Abundance with Correlations with Mercury and Methylmercury Concentrations

(2019) Geoff A. Christensen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mercury speciation, bioavailability, and biomagnification in contaminated streams on the Savannah River Site (SC, USA)

(2019) Xiaoyu Xu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The variation in microbial community structure under different heavy metal contamination levels in paddy soils

(2019) Yaoben Lin et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Metagenomic Evaluation of Bacterial and Fungal Assemblages Enriched within Diffusion Chambers and Microbial Traps Containing Uraniferous Soils

(2019) Rajneesh Jaswal et al.   Microorganisms

Overlooked Role of Putative Non-Hg Methylators in Predicting Methylmercury Production in Paddy Soils

(2019) Yu-Rong Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Marsh edge erosion and associated carbon dynamics in coastal Louisiana: A proxy for future wetland-dominated coastlines world-wide

(2019) Yadav Sapkota et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Quantification and characterization of mercury resistant bacteria in sediments contaminated by artisanal small-scale gold mining activities, Kedougou region, Senegal

(2019) Birane Niane et al.   JOURNAL OF GEOCHEMICAL EXPLORATION

The denitrification potential of eroding wetlands in Barataria Bay, LA, USA: Implications for river reconnection

(2019) Jessica Vaccare et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Does edge erosion alter coastal wetland soil properties? A multi-method biogeochemical study

(2019) Havalend E. Steinmuller et al.   CATENA

Heavy metal tolerance traits of filamentous fungi isolated from gold and gemstone mining sites

(2018) Oluwatosin Gbemisola Oladipo et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Do constructed wetlands remove metals or increase metal bioavailability?

(2018) Xiaoyu Xu et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Physiological and Comparative Genomic Analysis of Arthrobacter sp. SRS-W-1-2016 Provides Insights on Niche Adaptation for Survival in Uraniferous Soils

(2018) Ashvini Chauhan et al.   Genes

The majority is uncultured

(2018) Ursula Hofer   NATURE REVIEWS MICROBIOLOGY

Proteogenomic Analysis of Burkholderia Species Strains 25 and 46 Isolated from Uraniferous Soils Reveals Multiple Mechanisms to Cope with Uranium Stress

(2018) Meenakshi Agarwal et al.   Cells

25 years of serving the community with ribosomal RNA gene reference databases and tools

(2017) Frank Oliver Glöckner et al.   JOURNAL OF BIOTECHNOLOGY

In situ cultivation of previously uncultivable microorganisms using the ichip

(2017) Brittany Berdy et al.   Nature Protocols

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Mercury alters the bacterial community structure and diversity in soil even at concentrations lower than the guideline values

(2016) Khandaker Rayhan Mahbub et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Structural investigation of the lipopolysaccharide O-chain isolated from Burkholderia fungorum strain DSM 17061

(2016) Antonia De Felice et al.   CARBOHYDRATE RESEARCH

Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia

(2016) Anatoly P. Dobritsa et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bioleaching remediation of heavy metal-contaminated soils using Burkholderia sp. Z-90

(2016) Zhihui Yang et al.   JOURNAL OF HAZARDOUS MATERIALS

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial mercury methylation in Antarctic sea ice

(2016) Caitlin M. Gionfriddo et al.   Nature Microbiology

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

List of new names and new combinations previously effectively, but not validly, published

(2015) Aharon Oren et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Spatial Distribution of an Uranium-Respiring Betaproteobacterium at the Rifle, CO Field Research Site

(2015) Nicole M. Koribanics et al.   PLoS One

Novel diesel-oil-degrading bacteria and fungi from the Ecuadorian Amazon rainforest

(2015) N. R. Maddela et al.   WATER SCIENCE AND TECHNOLOGY

Geochemical influences and mercury methylation of a dental wastewater microbiome

(2015) Asha Rani et al.   Scientific Reports

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

(2015) Christopher L. Hemme et al.   Frontiers in Microbiology

Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution

(2014) Mikhail Tikhonov et al.   ISME Journal

Potential of Microscopic Fungi Isolated from Mercury Contaminated Soils to Accumulate and Volatilize Mercury(II)

(2014) Martin Urík et al.   WATER AIR AND SOIL POLLUTION

Mechanisms Regulating Mercury Bioavailability for Methylating Microorganisms in the Aquatic Environment: A Critical Review

(2013) Heileen Hsu-Kim et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biodegradation of petroleum hydrocarbons in the presence of nickel and cobalt

(2013) Ganiyu Oladunjoye Oyetibo et al.   JOURNAL OF BASIC MICROBIOLOGY

Fungi outcompete bacteria under increased uranium concentration in culture media

(2013) Saqib Mumtaz et al.   JOURNAL OF ENVIRONMENTAL RADIOACTIVITY

Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments

(2013) Christopher S. Miller et al.   PLoS One

Endogenous Stress Caused by Faulty Oxidation Reactions Fosters Evolution of 2,4-Dinitrotoluene-Degrading Bacteria

(2013) Danilo Pérez-Pantoja et al.   PLoS Genetics

Bioremediation of mercury and the importance of bacterial mer genes

(2012) Hirak R. Dash et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Untapped potential: exploiting fungi in bioremediation of hazardous chemicals

(2011) Hauke Harms et al.   NATURE REVIEWS MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Roles of dissolved organic matter in the speciation of mercury and methylmercury in a contaminated ecosystem in Oak Ridge, Tennessee

(2010) Wenming Dong et al.   Environmental Chemistry

History of mercury use and environmental contamination at the Oak Ridge Y-12 Plant

(2010) Scott C. Brooks et al.   ENVIRONMENTAL POLLUTION

Strategies for culture of ‘unculturable’ bacteria

(2010) Sonia R. Vartoukian et al.   FEMS MICROBIOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global Biogeochemical Cycling of Mercury: A Review

(2009) Noelle E. Selin   Annual Review of Environment and Resources

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Effect of gelling agent on colony formation in solid cultivation of microbial community in lake sediment

(2009) Hideyuki Tamaki et al.   ENVIRONMENTAL MICROBIOLOGY

Precipitation of Mercuric Sulfide Nanoparticles in NOM-Containing Water: Implications for the Natural Environment

(2009) Amrika Deonarine et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Kinetic Controls on the Complexation between Mercury and Dissolved Organic Matter in a Contaminated Environment

(2009) Carrie L. Miller et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Potential of Penicillium Species in the Bioremediation Field

(2009) Ana Lúcia Leitão   International Journal of Environmental Research and Public Health

Mercury methylation by a microbial community from sediments of the Adour Estuary (Bay of Biscay, France)

(2008) R. Duran et al.   ENVIRONMENTAL POLLUTION

Microbial community dynamics in uranium contaminated subsurface sediments under biostimulated conditions with high nitrate and nickel pressure

(2008) David Moreels et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Matrix-assisted laser desorption ionisation-time-of of-flight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complex

(2008) Elke Vanlaere et al.   JOURNAL OF MICROBIOLOGICAL METHODS

A trap for in situ cultivation of filamentous actinobacteria

(2008) Ekaterina Gavrish et al.   JOURNAL OF MICROBIOLOGICAL METHODS