Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph

Limits of long-term selection against Neandertal introgression

(2019) Martin Petr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Deeply Divergent Denisovan Ancestries in Papuans

(2019) Guy S. Jacobs et al.   CELL

Apidima Cave fossils provide earliest evidence of Homo sapiens in Eurasia

(2019) Katerina Harvati et al.   NATURE

Models of archaic admixture and recent history from two-locus statistics

(2019) Aaron P. Ragsdale et al.   PLoS Genetics

Inferring whole-genome histories in large population datasets

(2019) Jerome Kelleher et al.   NATURE GENETICS

A method for genome-wide genealogy estimation for thousands of samples

(2019) Leo Speidel et al.   NATURE GENETICS

Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture

(2018) Sharon R. Browning et al.   CELL

Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans

(2018) Matthias Steinrücken et al.   MOLECULAR ECOLOGY

The earliest modern humans outside Africa

(2018) Israel Hershkovitz et al.   SCIENCE

The genome of the offspring of a Neanderthal mother and a Denisovan father

(2018) Viviane Slon et al.   NATURE

A high-coverage Neandertal genome from Vindija Cave in Croatia

(2017) Kay Prüfer et al.   SCIENCE

Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals

(2017) Cosimo Posth et al.   Nature Communications

The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans

(2016) Sriram Sankararaman et al.   CURRENT BIOLOGY

Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies

(2016) PingHsun Hsieh et al.   GENOME RESEARCH

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins

(2016) Matthias Meyer et al.   NATURE

Ancient gene flow from early modern humans into Eastern Neanderthals

(2016) Martin Kuhlwilm et al.   NATURE

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes

(2016) Jerome Kelleher et al.   PLoS Computational Biology

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

Resurrecting Surviving Neandertal Lineages from Modern Human Genomes

(2014) B. Vernot et al.   SCIENCE

Genome-Wide Inference of Ancestral Recombination Graphs

(2014) Matthew D. Rasmussen et al.   PLoS Genetics

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser

(2013) B. J. Raney et al.   BIOINFORMATICS

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Global Genetic Variation at OAS1 Provides Evidence of Archaic Admixture in Melanesian Populations

(2012) F. L. Mendez et al.   MOLECULAR BIOLOGY AND EVOLUTION

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

The landscape of recombination in African Americans

(2011) Anjali G. Hinch et al.   NATURE

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

Genetic evidence for archaic admixture in Africa

(2011) M. F. Hammer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Human-specific transcriptional regulation of CNS development genes by FOXP2

(2009) Genevieve Konopka et al.   NATURE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics