Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
出版年份 2020 全文链接
标题
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
作者
关键词
-
出版物
Genome Medicine
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-06-30
DOI
10.1186/s13073-020-00751-4
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding
- (2020) Roujian Lu et al. LANCET
- A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster
- (2020) Jasper Fuk-Woo Chan et al. LANCET
- A pneumonia outbreak associated with a new coronavirus of probable bat origin
- (2020) Peng Zhou et al. NATURE
- SARS-CoV-2 Viral Load in Upper Respiratory Specimens of Infected Patients
- (2020) Lirong Zou et al. NEW ENGLAND JOURNAL OF MEDICINE
- First Case of 2019 Novel Coronavirus in the United States
- (2020) Michelle L. Holshue et al. NEW ENGLAND JOURNAL OF MEDICINE
- A Novel Coronavirus from Patients with Pneumonia in China, 2019
- (2020) Na Zhu et al. NEW ENGLAND JOURNAL OF MEDICINE
- Author Correction: A new coronavirus associated with human respiratory disease in China
- (2020) Fan Wu et al. NATURE
- Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform
- (2019) Qiaoling Li et al. BMC GENOMICS
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Correction: MERS-CoV spillover at the camel-human interface
- (2018) Gytis Dudas et al. eLife
- Stochastic processes constrain the within and between host evolution of influenza virus
- (2018) John T McCrone et al. eLife
- Zika virus evolution and spread in the Americas
- (2017) Hayden C. Metsky et al. NATURE
- Genomic epidemiology reveals multiple introductions of Zika virus into the United States
- (2017) Nathan D. Grubaugh et al. NATURE
- Virus genomes reveal factors that spread and sustained the Ebola epidemic
- (2017) Gytis Dudas et al. NATURE
- Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
- (2017) Joshua Quick et al. Nature Protocols
- Towards a genomics-informed, real-time, global pathogen surveillance system
- (2017) Jennifer L. Gardy et al. NATURE REVIEWS GENETICS
- BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing
- (2017) Chun Hang Au et al. Scientific Reports
- The sample of choice for detecting Middle East respiratory syndrome coronavirus in asymptomatic dromedary camels using real-time reversetranscription polymerase chain reaction
- (2016) K.A. MOHRAN et al. REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES
- Coronaviruses and the human airway: a universal system for virus-host interaction studies
- (2016) Hulda R. Jonsdottir et al. Virology Journal
- Intra-host dynamics of Ebola virus during 2014
- (2016) Ming Ni et al. Nature Microbiology
- Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
- (2015) Daniel J. Park et al. CELL
- Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia
- (2015) J. S. M. Sabir et al. SCIENCE
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
- (2014) S. K. Gire et al. SCIENCE
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Viral Quasispecies Evolution
- (2012) E. Domingo et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
- (2011) Martin Kircher et al. NUCLEIC ACIDS RESEARCH
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More