Faecal DNA to the rescue: Shotgun sequencing of non-invasive samples reveals two subspecies of Southeast Asian primates to be Critically Endangered species
出版年份 2020 全文链接
标题
Faecal DNA to the rescue: Shotgun sequencing of non-invasive samples reveals two subspecies of Southeast Asian primates to be Critically Endangered species
作者
关键词
-
出版物
Scientific Reports
Volume 10, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-06-10
DOI
10.1038/s41598-020-66007-8
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Oil palm plantations in Peninsular Malaysia: Determinants and constraints on expansion
- (2019) Varada S. Shevade et al. PLoS One
- Presbytis neglectus or P. femoralis, Colobine Molecular Phylogenies, and GenBank Submission of Newly Generated DNA Sequences
- (2019) Vincent Nijman FOLIA PRIMATOLOGICA
- Boosting natural history research via metagenomic clean-up of crowdsourced feces
- (2019) Amrita Srivathsan et al. PLOS BIOLOGY
- How many species of mammals are there?
- (2018) Connor J Burgin et al. JOURNAL OF MAMMALOGY
- MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
- (2018) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Methylation-based enrichment facilitates low-cost, noninvasive genomic scale sequencing of populations from feces
- (2018) Kenneth L. Chiou et al. Scientific Reports
- Taxonomy based on science is necessary for global conservation
- (2018) Scott A. Thomson et al. PLOS BIOLOGY
- Is Malaysia’s banded langur, Presbytis femoralis femoralis, actually Presbytis neglectus neglectus? Taxonomic revision with new insights on the radiation history of the Presbytis species group in Southeast Asia
- (2018) Muhammad Abu Bakar Abdul-Latiff et al. PRIMATES
- Expansion of Industrial Plantations Continues to Threaten Malayan Tiger Habitat
- (2017) Varada S. Shevade et al. Remote Sensing
- Scientific research on animal biodiversity is systematically biased towards vertebrates and temperate regions
- (2017) Mark A. Titley et al. PLoS One
- Fecal metagenomics for the simultaneous assessment of diet, parasites, and population genetics of an understudied primate
- (2016) Amrita Srivathsan et al. Frontiers in Zoology
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)
- (2014) Amrita Srivathsan et al. Molecular Ecology Resources
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
- (2014) Remco Bouckaert et al. PLoS Computational Biology
- A general species delimitation method with applications to phylogenetic placements
- (2013) Jiajie Zhang et al. BIOINFORMATICS
- True lemurs…true species - species delimitation using multiple data sources in the brown lemur complex
- (2013) Matthias Markolf et al. BMC EVOLUTIONARY BIOLOGY
- Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
- (2013) Christoph Hahn et al. NUCLEIC ACIDS RESEARCH
- MITOS: Improved de novo metazoan mitochondrial genome annotation
- (2012) Matthias Bernt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
- (2012) Andreas Wilm et al. NUCLEIC ACIDS RESEARCH
- Phylogenetic Relationships among the Colobine Monkeys Revisited: New Insights from Analyses of Complete mt Genomes and 44 Nuclear Non-Coding Markers
- (2012) Xiao Ping Wang et al. PLoS One
- Geographical and taxonomic biases in research on biodiversity in human-modified landscapes
- (2012) Morgan J. Trimble et al. Ecosphere
- On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature
- (2011) Amrita Srivathsan et al. CLADISTICS
- Phylogenetic relationships of leaf monkeys (Presbytis; Colobinae) based on cytochrome b and 12S rRNA genes
- (2011) V.F. Vun et al. GENETICS AND MOLECULAR RESEARCH
- ABGD, Automatic Barcode Gap Discovery for primary species delimitation
- (2011) N. PUILLANDRE et al. MOLECULAR ECOLOGY
- Mitochondrial phylogeny of leaf monkeys (genus Presbytis, Eschscholtz, 1821) with implications for taxonomy and conservation
- (2011) Dirk Meyer et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Soils on exposed Sunda Shelf shaped biogeographic patterns in the equatorial forests of Southeast Asia
- (2011) J. W. F. Slik et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
- (2010) Gaurav Vaidya et al. CLADISTICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure
- (2010) A. C. Stone et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The Monkeys of the Genera Pithecus (or Presbytis) and Pygulhrix found to the East of the Bay of Bengal.
- (2010) R. I. Pocock PROCEEDINGS OF THE ZOOLOGICAL SOCIETY OF LONDON
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Establishing the foundation for an applied molecular taxonomy of otters in Southeast Asia
- (2008) Klaus-Peter Koepfli et al. CONSERVATION GENETICS
- The need for specifying species concepts: How many species of silvered langurs (Trachypithecus cristatus group) should be recognized?
- (2008) Tan Siew Hoong Denise et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Mitochondrial phylogeny, taxonomy and biogeography of the silvered langur species group (Trachypithecus cristatus)
- (2008) Christian Roos et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started