Changes in fecal microbiota and metabolomics in a child with juvenile idiopathic arthritis (JIA) responding to two treatment periods with exclusive enteral nutrition (EEN)

Fecal Microbiota in Pediatric Inflammatory Bowel Disease and Its Relation to Inflammation

(2015) Kaija-Leena Kolho et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Bioinformatics tools for the analysis of NMR metabolomics studies focused on the identification of clinically relevant biomarkers

(2015) Leonor Puchades-Carrasco et al.   BRIEFINGS IN BIOINFORMATICS

Brief Report: Intestinal Dysbiosis in Ankylosing Spondylitis

(2015) Mary-Ellen Costello et al.   Arthritis & Rheumatology

Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome

(2015) Helene Engstrand Lilja et al.   Microbiome

DegePrime, a Program for Degenerate Primer Design for Broad-Taxonomic-Range PCR in Microbial Ecology Studies

(2014) Luisa W. Hugerth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Role of the Microbiota in Immunity and Inflammation

(2014) Yasmine Belkaid et al.   CELL

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Anti-inflammatory effect by exclusive enteral nutrition (EEN) in a patient with juvenile idiopathic arthritis (JIA): brief report

(2014) Lillemor Berntson   CLINICAL RHEUMATOLOGY

Decline in Presumptively Protective Gut Bacterial Species and Metabolites Are Paradoxically Associated with Disease Improvement in Pediatric Crohn’s Disease During Enteral Nutrition

(2014) Konstantinos Gerasimidis et al.   INFLAMMATORY BOWEL DISEASES

Altered microbiota associated with abnormal humoral immune responses to commensal organisms in enthesitis-related arthritis

(2014) Matthew L Stoll et al.   ARTHRITIS RESEARCH & THERAPY

Decreased Bacterial Diversity Characterizes the Altered Gut Microbiota in Patients With Psoriatic Arthritis, Resembling Dysbiosis in Inflammatory Bowel Disease

(2014) Jose U. Scher et al.   Arthritis & Rheumatology

Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study

(2013) Mora Murri et al.   BMC Medicine

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

(2013) Yukihiro Furusawa et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Two birds with one stone: Doing metabolomics with your proteomics kit

(2013) Roman Fischer et al.   PROTEOMICS

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

(2013) Jose U Scher et al.   eLife

Altered expression of intestinal human leucocyte antigen D-related and immune signalling molecules in juvenile idiopathic arthritis

(2012) M. Arvonen et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Effect of exclusive enteral nutrition on gut microflora function in children with Crohn's disease

(2012) Bo Tjellström et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Fecal Calprotectin in Children with the Enthesitis-related Arthritis Subtype of Juvenile Idiopathic Arthritis

(2011) MATTHEW L. STOLL et al.   JOURNAL OF RHEUMATOLOGY

Understanding the role of gut microbiome–host metabolic signal disruption in health and disease

(2011) Elaine Holmes et al.   TRENDS IN MICROBIOLOGY

Diagnostic properties of metabolic perturbations in rheumatoid arthritis

(2011) Rasmus K Madsen et al.   ARTHRITIS RESEARCH & THERAPY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Toward defining the autoimmune microbiome for type 1 diabetes

(2010) Adriana Giongo et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Sustained modulation of intestinal bacteria by exclusive enteral nutrition used to treat children with Crohn’s disease

(2008) S. T. LEACH et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS