A chromosome-level genome assembly of the wild rice Oryza rufipogon facilitates tracing the origins of Asian cultivated rice
出版年份 2020 全文链接
标题
A chromosome-level genome assembly of the wild rice Oryza rufipogon facilitates tracing the origins of Asian cultivated rice
作者
关键词
-
出版物
Science China-Life Sciences
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-08-01
DOI
10.1007/s11427-020-1738-x
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A high-quality genome sequence of alkaligrass provides insights into halophyte stress tolerance
- (2020) Wenting Zhang et al. Science China-Life Sciences
- Characterization and evolutionary dynamics of complex regions in eukaryotic genomes
- (2019) José Ranz et al. Science China-Life Sciences
- Parallel Speciation of Wild Rice Associated with Habitat Shifts
- (2019) Zhe Cai et al. MOLECULAR BIOLOGY AND EVOLUTION
- Molecular mechanisms of hybrid sterility in rice
- (2019) Yongyao Xie et al. Science China-Life Sciences
- Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads
- (2019) Huilong Du et al. Nature Communications
- Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
- (2018) Joshua C. Stein et al. NATURE GENETICS
- Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice
- (2018) Qiang Zhao et al. NATURE GENETICS
- Genomic variation in 3,010 diverse accessions of Asian cultivated rice
- (2018) Wensheng Wang et al. NATURE
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
- (2017) Olga Dudchenko et al. SCIENCE
- Sequencing and de novo assembly of a near complete indica rice genome
- (2017) Huilong Du et al. Nature Communications
- Assemblytics: a web analytics tool for the detection of variants from an assembly
- (2016) Maria Nattestad et al. BIOINFORMATICS
- Multi-step formation, evolution and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes
- (2016) Huiwu Tang et al. CELL RESEARCH
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Extensive sequence divergence between the reference genomes of two eliteindicarice varieties Zhenshan 97 and Minghui 63
- (2016) Jianwei Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Population genetic structure ofOryza rufipogonandOryza nivara: implications for the origin ofO. nivara
- (2015) Rong Liu et al. MOLECULAR ECOLOGY
- PGSB PlantsDB: updates to the database framework for comparative plant genome research
- (2015) Manuel Spannagl et al. NUCLEIC ACIDS RESEARCH
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- SNP genotyping and characterization of pistil traits revealing a distinct phylogenetic relationship among the species of Oryza
- (2014) Balram Marathi et al. EUPHYTICA
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
- (2014) Muhua Wang et al. NATURE GENETICS
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Rapid diversification of fiveOryzaAA genomes associated with rice adaptation
- (2014) Qun-Jie Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Archaeological and genetic insights into the origins of domesticated rice
- (2014) B. L. Gross et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Could abiotic stress tolerance in wild relatives of rice be used to improve Oryza sativa?
- (2013) Brian J. Atwell et al. PLANT SCIENCE
- Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
- (2013) Jinfeng Chen et al. Nature Communications
- A map of rice genome variation reveals the origin of cultivated rice
- (2012) Xuehui Huang et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Independent Domestication of Asian Rice Followed by Gene Flow from japonica to indica
- (2011) C.-c. Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Molecular evidence for a single evolutionary origin of domesticated rice
- (2011) J. Molina et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes
- (2011) Ziwen He et al. PLoS Genetics
- GCTA: A Tool for Genome-wide Complex Trait Analysis
- (2010) Jian Yang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome
- (2010) Keyan Zhao et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Evidence-based gene predictions in plant genomes
- (2009) C. Liang et al. GENOME RESEARCH
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
- (2009) K. L. McNally et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- Control of a key transition from prostrate to erect growth in rice domestication
- (2008) Lubin Tan et al. NATURE GENETICS
- Genetic control of rice plant architecture under domestication
- (2008) Jian Jin et al. NATURE GENETICS
- Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes
- (2008) Y. Long et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More