MSH1is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes

DNA Repair and the Stability of the Plant Mitochondrial Genome

(2020) Nicolas Chevigny et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Tempo and Mode of Angiosperm Mitochondrial Genome Divergence Inferred from Intraspecific Variation in Arabidopsis thaliana

(2020) Zhiqiang Wu et al.   G3-Genes Genomes Genetics

Mitochondrial DNA Repair in an Arabidopsis thaliana Uracil N-Glycosylase Mutant

(2020) Emily Wynn et al.   Plants-Basel

Factors Affecting Organelle Genome Stability in Physcomitrella patens

(2020) Masaki Odahara   Plants-Basel

Segregation of an MSH1 RNAi transgene produces heritable non-genetic memory in association with methylome reprogramming

(2020) Xiaodong Yang et al.   Nature Communications

Plant Organelle Genome Replication

(2019) Stewart A. Morley et al.   Plants-Basel

Organellar protein multi-functionality and phenotypic plasticity in plants

(2019) Sally A. Mackenzie et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Base-excision repair deficiency alone or combined with increased oxidative stress does not increase mtDNA point mutations in mice

(2018) Johanna H K Kauppila et al.   NUCLEIC ACIDS RESEARCH

Detecting Rare Mutations and DNA Damage with Sequencing-Based Methods

(2018) Daniel B. Sloan et al.   TRENDS IN BIOTECHNOLOGY

Plant organellar DNA polymerases paralogs exhibit dissimilar nucleotide incorporation fidelity

(2018) Víctor M. Ayala-García et al.   FEBS Journal

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

The GIY-YIG endonuclease domain of Arabidopsis MutS homolog 1 specifically binds to branched DNA structures

(2018) Kenji Fukui et al.   FEBS LETTERS

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes

(2018) David Paez-Espino et al.   NUCLEIC ACIDS RESEARCH

Causes and Consequences of Rapidly Evolving mtDNA in a Plant Lineage

(2017) Justin C. Havird et al.   Genome Biology and Evolution

MSH1 maintains organelle genome stability and genetically interacts with RECA and RECG in the moss Physcomitrella patens

(2017) Masaki Odahara et al.   PLANT JOURNAL

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

(2016) Melanie Schirmer et al.   BMC BIOINFORMATICS

Coevolution between Nuclear-Encoded DNA Replication, Recombination, and Repair Genes and Plastid Genome Complexity

(2016) Jin Zhang et al.   Genome Biology and Evolution

The Roles of Mutation, Selection, and Expression in Determining Relative Rates of Evolution in Mitochondrial versus Nuclear Genomes

(2016) Justin C. Havird et al.   MOLECULAR BIOLOGY AND EVOLUTION

MSH1 Is a Plant Organellar DNA Binding and Thylakoid Protein under Precise Spatial Regulation to Alter Development

(2016) Kamaldeep S. Virdi et al.   Molecular Plant

Spontaneous chloroplast mutants mostly occur by replication slippage and show a biased pattern in the plastome of Oenothera

(2016) Amid Massouh et al.   PLANT CELL

Are Synonymous Substitutions in Flowering Plant Mitochondria Neutral?

(2015) Emily L. Wynn et al.   JOURNAL OF MOLECULAR EVOLUTION

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

Arabidopsis MSH1 mutation alters the epigenome and produces heritable changes in plant growth

(2015) Kamaldeep S. Virdi et al.   Nature Communications

Genes and Junk in Plant Mitochondria—Repair Mechanisms and Selection

(2014) Alan C. Christensen   Genome Biology and Evolution

Detecting ultralow-frequency mutations by Duplex Sequencing

(2014) Scott R Kennedy et al.   Nature Protocols

Arabidopsis ZDP DNA 3′-phosphatase and ARP endonuclease function in 8-oxoG repair initiated by FPG and OGG1 DNA glycosylases

(2014) Dolores Córdoba-Cañero et al.   PLANT JOURNAL

Oxidative Stress Is Not a Major Contributor to Somatic Mitochondrial DNA Mutations

(2014) Leslie S. Itsara et al.   PLoS Genetics

Plant Mitochondrial Genome Evolution Can Be Explained by DNA Repair Mechanisms

(2013) Alan C. Christensen   Genome Biology and Evolution

Postreplicative Mismatch Repair

(2013) J. Jiricny   Cold Spring Harbor Perspectives in Biology

Ultra-Sensitive Sequencing Reveals an Age-Related Increase in Somatic Mitochondrial Mutations That Are Inconsistent with Oxidative Damage

(2013) Scott R. Kennedy et al.   PLoS Genetics

The Chloroplast Triggers Developmental Reprogramming When MUTS HOMOLOG1 Is Suppressed in Plants

(2012) Y.-Z. Xu et al.   PLANT PHYSIOLOGY

RecA-Dependent DNA Repair Results in Increased Heteroplasmy of the Arabidopsis Mitochondrial Genome

(2012) M. Miller-Messmer et al.   PLANT PHYSIOLOGY

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

(2011) Jaime I Davila et al.   BMC BIOLOGY

A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function

(2011) Jaret P Bilewitch et al.   BMC EVOLUTIONARY BIOLOGY

Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment

(2011) Hiroyuki Ogata et al.   ISME Journal

MutS HOMOLOG1 Is a Nucleoid Protein That Alters Mitochondrial and Plastid Properties and Plant Response to High Light

(2011) Ying-Zhi Xu et al.   PLANT CELL

Divergent Roles for the Two PolI-Like Organelle DNA Polymerases of Arabidopsis

(2011) J.-S. Parent et al.   PLANT PHYSIOLOGY

ArabidopsisUracil DNA Glycosylase (UNG) Is Required for Base Excision Repair of Uracil and Increases Plant Sensitivity to 5-Fluorouracil

(2010) Dolores Córdoba-Cañero et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Testing for Selection on Synonymous Sites in Plant Mitochondrial DNA: The Role of Codon Bias and RNA Editing

(2010) Daniel B. Sloan et al.   JOURNAL OF MOLECULAR EVOLUTION

Recombination and the maintenance of plant organelle genome stability

(2010) Alexandre Maréchal et al.   NEW PHYTOLOGIST

Fewer genes than organelles: extremely low and variable gene copy numbers in mitochondria of somatic plant cells

(2010) Tobias Preuten et al.   PLANT JOURNAL

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

(2010) Einat Hazkani-Covo et al.   PLoS Genetics

Evidence That Msh1p Plays Multiple Roles in Mitochondrial Base Excision Repair

(2009) L. Pogorzala et al.   GENETICS

Deletional Bias across the Three Domains of Life

(2009) Chih-Horng Kuo et al.   Genome Biology and Evolution

Plant mitochondria possess a short-patch base excision DNA repair pathway

(2009) Pierre Boesch et al.   NUCLEIC ACIDS RESEARCH

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION