Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice

Highly resolved systems biology to dissect the etioplast-to-chloroplast transition in tobacco leaves

(2019) Tegan Armarego-Marriott et al.   PLANT PHYSIOLOGY

Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance

(2019) Duorong Xu et al.   PLANT PHYSIOLOGY

Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperature

(2019) Dongzhi Lin et al.   PLANT BIOLOGY

Rice FLOURY ENDOSPERM 10 encodes a pentatricopeptide repeat protein that is essential for the trans ‐splicing of mitochondrial nad1 intron 1 and endosperm development

(2019) Mingming Wu et al.   NEW PHYTOLOGIST

Stable native RIP9 complexes associate with C‐to‐U RNA editing activity, PPRs, RIPs, OZ1, ORRM1, and ISE2

(2019) Rafael Sandoval et al.   PLANT JOURNAL

Extensive Post-Transcriptional Regulation of Nuclear Gene Expression by Plastid Retrograde Signals

(2019) Guo-Zhang Wu et al.   PLANT PHYSIOLOGY

Establishment of a Heterologous RNA Editing Event in Chloroplasts

(2019) F. Vanessa Loiacono et al.   PLANT PHYSIOLOGY

Plant organellar RNA editing: what 30 years of research has revealed

(2019) Ian D. Small et al.   PLANT JOURNAL

ECD1 functions as an RNA-editing trans-factor of rps14-149 in plastids and is required for early chloroplast development in seedlings

(2018) Tian Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress

(2018) Xi Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA editing of plastid-encoded genes

(2018) Y. Lu   PHOTOSYNTHETICA

An evolutionarily conserved P-subfamily pentatricopeptide repeat protein is required to splice the plastid ndhA transcript in the moss Physcomitrella patens and Arabidopsis thaliana

(2018) Ayaka Ito et al.   PLANT JOURNAL

The pentatricopeptide repeat protein EMPTY PERICARP8 is required for the splicing of three mitochondrial introns and seed development in maize

(2018) Feng Sun et al.   PLANT JOURNAL

Control of Retrograde Signaling by Rapid Turnover of GENOMES UNCOUPLED1

(2018) Guo-Zhang Wu et al.   PLANT PHYSIOLOGY

Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.)

(2018) Xiaoming Yang et al.   Rice

Editing of Chloroplast rps14 by PPR Editing Factor EMB2261 Is Essential for Arabidopsis Development

(2018) Yueming K. Sun et al.   Frontiers in Plant Science

Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments

(2018) Guanglong Chen et al.   BMC GENOMICS

The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice

(2018) Xuean Cui et al.   NEW PHYTOLOGIST

GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice

(2018) Yang Wang et al.   PLANT SCIENCE

The RNA Editing Factor WSP1 Is Essential for Chloroplast Development in Rice

(2017) Zhiguo Zhang et al.   Molecular Plant

OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice

(2017) Jianpeng Tang et al.   PLANT MOLECULAR BIOLOGY

A Rice PECTATE LYASE-LIKE Gene Is Required for Plant Growth and Leaf Senescence

(2017) Yujia Leng et al.   PLANT PHYSIOLOGY

WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development

(2017) Ying Wang et al.   Frontiers in Plant Science

Reliable Selection and Holistic Stability Evaluation of Reference Genes for Rice Under 22 Different Experimental Conditions

(2016) Zhaohai Wang et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

A PPR protein in the PLS subfamily stabilizes the 5′-end of processedrpl16mRNAs in maize chloroplasts

(2016) Kamel Hammani et al.   NUCLEIC ACIDS RESEARCH

The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrialorf291RNA in Arabidopsis

(2016) Sota Fujii et al.   PLANT JOURNAL

The PPR-SMR protein PPR53 enhances the stability and translation of specific chloroplast RNAs in maize

(2016) Reimo Zoschke et al.   PLANT JOURNAL

SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana

(2016) Wenjuan Wu et al.   PLANT JOURNAL

WHITE PANICLE1, a Val-tRNA Synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development

(2016) Yunlong Wang et al.   PLANT PHYSIOLOGY

The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript

(2016) Nader Aryamanesh et al.   PLANT PHYSIOLOGY

The Unexpected Diversity of Plant Organelle RNA Editosomes

(2016) Tao Sun et al.   TRENDS IN PLANT SCIENCE

RNA Editing and Its Molecular Mechanism in Plant Organelles

(2016) Mizuho Ichinose et al.   Genes

Chloroplast RNA polymerases: Role in chloroplast biogenesis

(2015) Thomas Börner et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Insights into chloroplast biogenesis and development

(2015) Barry J. Pogson et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

A Conserved Glutamate Residue in the C-terminal Deaminase Domain of Pentatricopeptide Repeat Proteins Is Required for RNA Editing Activity

(2015) Michael L. Hayes et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Retrograde signaling between plastid and nucleus: A review

(2015) Rachana Singh et al.   JOURNAL OF PLANT PHYSIOLOGY

A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants

(2015) Xingliang Ma et al.   Molecular Plant

Functional analysis of theArabidopsis thaliana CHLOROPLAST BIOGENESIS 19pentatricopeptide repeat editing protein

(2015) Maricela Ramos-Vega et al.   NEW PHYTOLOGIST

AEF1/MPR25 is implicated in RNA editing of plastidatpFand mitochondrialnad5, and also promotesatpFsplicing in Arabidopsis and rice

(2015) Aaron Yap et al.   PLANT JOURNAL

The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of MitochondrialNADH Dehydrogenase Subunit7Intron 2 in Arabidopsis

(2015) Wei-Yu Hsieh et al.   PLANT PHYSIOLOGY

Structure of a bacterial RNA polymerase holoenzyme open promoter complex

(2015) Brian Bae et al.   eLife

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Phosphatidylglycerol biosynthesis is required for the development of embryos and normal membrane structures of chloroplasts and mitochondria inArabidopsis

(2014) Ryo Tanoue et al.   FEBS LETTERS

A Novel Chloroplast-Localized Pentatricopeptide Repeat Protein Involved in Splicing Affects Chloroplast Development and Abiotic Stress Response in Rice

(2014) Junjie Tan et al.   Molecular Plant

CRISPR-P: A Web Tool for Synthetic Single-Guide RNA Design of CRISPR-System in Plants

(2014) Yang Lei et al.   Molecular Plant

CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences

(2014) Y. Lin et al.   NUCLEIC ACIDS RESEARCH

AtSIG6 and other members of the sigma gene family jointly but differentially determine plastid target gene expression in Arabidopsis thaliana

(2014) Sylvia Bock et al.   Frontiers in Plant Science

High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells

(2013) Yanfang Fu et al.   NATURE BIOTECHNOLOGY

A pentatricopeptide repeat gene of rice is required for splicing of chloroplast transcripts and RNA editing of ndhA

(2013) Takayuki Asano et al.   Plant Biotechnology

A Major Role for the Plastid-Encoded RNA Polymerase Complex in the Expression of Plastid Transfer RNAs

(2013) R. Williams-Carrier et al.   PLANT PHYSIOLOGY

The Primary Transcriptome of Barley Chloroplasts: Numerous Noncoding RNAs and the Dominating Role of the Plastid-Encoded RNA Polymerase

(2012) P. Zhelyazkova et al.   PLANT CELL

FtsHi1/ARC1is an essential gene in Arabidopsis that links chloroplast biogenesis and division

(2012) Deena K. Kadirjan-Kalbach et al.   PLANT JOURNAL

RiceMPR25encodes a pentatricopeptide repeat protein and is essential for RNA editing ofnad5transcripts in mitochondria

(2012) Takushi Toda et al.   PLANT JOURNAL

Disruption of a Rice Pentatricopeptide Repeat Protein Causes a Seedling-Specific Albino Phenotype and Its Utilization to Enhance Seed Purity in Hybrid Rice Production

(2012) N. Su et al.   PLANT PHYSIOLOGY

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

(2012) S. Bentolila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

(2012) M. Takenaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Protein-Folding Problem, 50 Years On

(2012) K. A. Dill et al.   SCIENCE

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

(2012) Alice Barkan et al.   PLoS Genetics

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes

(2011) Yang Zhang et al.   Plant Methods

Nucleoid-Enriched Proteomes in Developing Plastids and Chloroplasts from Maize Leaves: A New Conceptual Framework for Nucleoid Functions

(2011) W. Majeran et al.   PLANT PHYSIOLOGY

Two complementary recessive genes in duplicated segments control etiolation in rice

(2010) Donghai Mao et al.   THEORETICAL AND APPLIED GENETICS

Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts

(2009) K. Okuda et al.   PLANT CELL

LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis

(2009) W. Cai et al.   PLANT PHYSIOLOGY

Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs

(2009) M. Tillich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript

(2009) J. C. Robbins et al.   RNA

The Pentatricopeptide Repeat Protein PPR5 Stabilizes a Specific tRNA Precursor in Maize Chloroplasts

(2008) S. Beick et al.   MOLECULAR AND CELLULAR BIOLOGY

CLB19, a pentatricopeptide repeat protein required for editing ofrpoAandclpPchloroplast transcripts

(2008) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth

(2008) Wenbin Zhou et al.   PLANT JOURNAL

Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice

(2008) Tomohiko Kazama et al.   PLANT JOURNAL