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Dynamic Enhancer DNA Methylation as Basis for Transcriptional and Cellular Heterogeneity of ESCs

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Zscan4 Inhibits Maintenance DNA Methylation to Facilitate Telomere Elongation in Mouse Embryonic Stem Cells

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Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells

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TET-mediated DNA demethylation controls gastrulation by regulating Lefty–Nodal signalling

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The DNA methyltransferase DNMT3C protects male germ cells from transposon activity

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Tet3-Mediated DNA Demethylation Contributes to the Direct Conversion of Fibroblast to Functional Neuron

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MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs

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Recognition of H3K9 methylation by GLP is required for efficient establishment of H3K9 methylation, rapid target gene repression, and mouse viability

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H3K9 methyltransferase G9a negatively regulates UHRF1 transcription during leukemia cell differentiation

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5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation

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High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice

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Charting a dynamic DNA methylation landscape of the human genome

(2013) Michael J. Ziller et al.   NATURE

Large conserved domains of low DNA methylation maintained by Dnmt3a

(2013) Mira Jeong et al.   NATURE GENETICS

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

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Epigenetic inheritance mediated by histone lysine methylation: maintaining transcriptional states without the precise restoration of marks?

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Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

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Variable Clonal Repopulation Dynamics Influence Chemotherapy Response in Colorectal Cancer

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DNA-binding factors shape the mouse methylome at distal regulatory regions

(2011) Michael B. Stadler et al.   NATURE

The Polycomb complex PRC2 and its mark in life

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Stem cells and reprogramming: breaking the epigenetic barrier?

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DNMT1 maintains progenitor function in self-renewing somatic tissue

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

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(2010) Roberto Bonasio et al.   SCIENCE

Dnmt3a-Dependent Nonpromoter DNA Methylation Facilitates Transcription of Neurogenic Genes

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Role of the polycomb protein EED in the propagation of repressive histone marks

(2009) Raphael Margueron et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

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Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors

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De novo DNA methylation promoted by G9a prevents reprogramming of embryonically silenced genes

(2008) Silvina Epsztejn-Litman et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY