Article
Infectious Diseases
Delphine Girlich, Souad Ouzani, Isabelle Langlois, Nicolas Fortineau, Thierry Naas, Laurent Dortet
Summary: The study demonstrates that using molecular biology tests on enriched culture media can improve the early detection rate of patients colonized with carbapenemase-producing Enterobacterales at low levels, while saving detection time.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES
(2021)
Article
Infectious Diseases
Josman Dantas Palmeira, Inah do Arte, Mai Muhammed Ragab Mersal, Catarina Carneiro da Mota, Helena Maria Neto Ferreira
Summary: This study evaluated the persistent contamination of carbapenem-resistant Enterobacterales in water from Douro River, Portugal. KPC-producing Enterobacterales were detected in the water samples, indicating a potential public health threat. The results suggested that the contamination may be caused by the circulation of mobile genetic elements carrying the KPC gene.
Review
Infectious Diseases
Janina Noster, Philipp Thelen, Axel Hamprecht
Summary: MDRE poses a global health threat and requires adjustments in healthcare management. Rapid detection of MDRE infections and colonization is key in guiding therapy and infection control.
Article
Microbiology
Frieder Fuchs, Aysel Ahmadzada, Lars Plambeck, Thorsten Wille, Axel Hamprecht
Summary: The study found that mecillinam was effective against Enterobacterales producing IMI- and OXA-48-like carbapenemases, but there were issues with susceptibility testing using agar gradient diffusion and disk diffusion methods.
FRONTIERS IN MICROBIOLOGY
(2021)
Article
Environmental Sciences
Prateek Kachoria, Sarani Sasidaran, Claire M. Welling, Praveen Rosario, Jin Zhou, Krishnendu Chakrabarty, Harald Grundl, Lotte Kristoferitsch, Sonia Grego
Summary: This study evaluates the application of a Urine Trap in a No-Mix Toilet and finds that user hygiene practices affect the urine separation efficiency. Data obtained from sensors can provide insights for improved deployment strategies of sanitation technologies.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Engineering, Environmental
Carl-Fredrik Flach, Marion Hutinel, Mohammad Razavi, Christina Ahren, D. G. Joakim Larsson
Summary: Sewage monitoring shows promise and limitations as a complement to traditional clinical resistance surveillance for early warning of rare forms of resistance. Carbapenemase-producing Enterobacterales (CPE) detected in sewage were related to those found in patients, but there were also inconsistencies between the two sources.
Article
Infectious Diseases
Marco Tinelli, Angelo Rossini, Luigia Scudeller, Dorjan Zabzuni, Giulia Errico, Elena Fogato, Roberto D'Angelo, Flaminia Gentiloni Silverj, Elisabetta Cesana, Luigi Cesare Bergamaschini, Francesca Pasi, Monica Monaco, Marina Cerquetti, Annalisa Pantosti, Maria Giufre
Summary: According to this study, elderly patients discharged from hospitals are at a higher risk of carrying carbapenemase-producing Enterobacterales (CPE). Patients with complicated urinary tract infections, bacteremia, and those staying in long-term care facilities are more likely to have persistent CPE colonization. The clonal characteristics of CPE isolates do not appear to influence persistence.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
(2022)
Article
Microbiology
Jessica J. Bartoszko, Robyn Mitchell, Kevin Katz, Michael Mulvey, Laura Mataseje
Summary: There is limited information on the epidemiology of extensively drug-resistant (XDR) carbapenemase-producing Enterobacterales (CPE) in Canada. This study found that international travel history, acquisition of CPE from healthcare exposure abroad, specific carbapenemase genes and bacterial strains were significantly associated with XDR status among CPE patients in Canada.
MICROBIOLOGY SPECTRUM
(2022)
Article
Infectious Diseases
Roy Assis, Michal Lasnoy, Amos Adler
Summary: This study compared the epidemiological and clinical characteristics of patients colonised or infected by different types of carbapenemase-producing Enterobacterales (CPE). It found that clinical infections were more common in KPC-CPE carriers compared to OXA-48-CPE, suggesting that colonisation by OXA-48-CPE might be less risky.
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE
(2021)
Article
Infectious Diseases
Juan Carlos Vazquez-Ucha, Isaac Alonso-Garcia, Paula Guijarro-Sanchez, Cristina Lasarte-Monterrubio, Laura Alvarez-Fraga, Arnau Cendon-Esteve, Michelle Outeda, Romina Maceiras, Andrea Pena-Escolano, Marta Martinez-Guitian, Jorge Arca-Suarez, German Bou, Alejandro Beceiro
Summary: Metallo- ,B-lactamase (MBL)-producing Enterobacterales, which are resistant to almost all ,B-lactam antibiotics, pose a significant threat due to their wide dissemination and difficulty in treatment. This study evaluated the activity of aztreonam in combination with novel ,B-lactamase inhibitors (BLIs) against clinical isolates co-producing MBLs and SBLs. The results showed that aztreonam/zidebactam, aztreonam/avibactam, and aztreonam/taniborbactam were the most effective combinations, offering promising therapeutic strategies for difficult-to-treat infections.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
(2023)
Article
Infectious Diseases
C. Hickey, S. Nguyen, J. Anes, D. Hurley, O. Donoghue, S. Fanning, K. Schaffer
Summary: This study reports discrepancies in antimicrobial susceptibility testing of IMP-producing Enterobacterales, complicating the management of severe sepsis.
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE
(2021)
Article
Microbiology
B. Hoellinger, S. Deboscker, F. Danion, T. Lavigne, F. Severac, Y. Ruch, A. Ursenbach, N. Lefebvre, P. Boyer, Y. Hansmann
Summary: This study found a high incidence of CPE infections in CPE carriers, which occurred earlier than other infections and led to a high mortality rate in a short period of time. A history of neurological disease was the only risk factor associated with CPE infections in CPE carriers.
MICROBIOLOGY SPECTRUM
(2022)
Article
Public, Environmental & Occupational Health
H. C. Harris, A. M. Buckley, W. Spittal, D. Ewin, E. Clark, J. Altringham, K. Bentley, I. B. Moura, M. H. Wilcox, N. Woodford, K. Davies, C. H. Chilton
Summary: Detection of CPE colonization in the gut is challenging, as antibiotic exposure disrupts microbiota populations and allows CPE proliferation. Different screening assays perform variably in detecting different CPE strains within intact or disrupted microbiota.
JOURNAL OF HOSPITAL INFECTION
(2021)
Article
Microbiology
Paz Aranega-Bou, Nicholas Ellaby, Matthew J. Ellington, Ginny Moore
Summary: Hospital sink waste traps and drains are reservoirs for multi-drug resistant bacteria, which can migrate through plumbing. The study showed that bacteria can transfer between sink traps and successfully integrate into new microbiomes.
Article
Environmental Sciences
Maeve Louise Farrell, Alexandra Chueiri, Mark Maguire, Aneta Kovarova, Georgios Miliotis, Louise O'Connor, Francesca Mcdonagh, Sinead Duane, Martin Cormican, Genevieve Devane, Alma Tuohy, Niall Delappe, Florence De Bock, Liam P. Burke, Dearbhaile Morris
Summary: The study is the first of its kind in Ireland to assess the longitudinal carriage of ESBL-PE and CPE in healthy individuals. It found that 24.4% of the participants were colonised with ESBL-EC, and 11.1% carried ESBL-EC for the entire study year. The median duration of ESBL-EC persistence in the gut was 10.3 months.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Review
Infectious Diseases
Solen Kerneis, Benoit Visseaux, Laurence Armand-Lefevre, Jean-Francois Timsit
Summary: Recent studies have shown that rapid multiplex-PCR assays can detect a wide range of respiratory viruses, bacteria, and even antibiotic resistance genes in upper or lower respiratory tract samples. While they have good correlation with gold-standard assays in clinical evaluations, they lack exhaustiveness, especially for hospital-acquired pneumonia.
CURRENT OPINION IN INFECTIOUS DISEASES
(2021)
Article
Infectious Diseases
Marion Lecuru, Marie-Helene Nicolas-Chanoine, Sebastien Tanaka, Philippe Montravers, Laurence Armand-Lefevre, Erick Denamur, Hedi Mammeri
Summary: The study found that the clinical isolates PmirS and PmirR of Proteus mirabilis were almost genetically identical, but the mutated cpxA gene in PmirR led to resistance. This research reveals that alterations in CpxA may confer imipenem and amikacin resistance in P. mirabilis without affecting its growth rate.
MICROBIAL DRUG RESISTANCE
(2021)
Article
Infectious Diseases
Naouale Maataoui, Lotfi Chemali, Juliette Patrier, Alexy Tran Dinh, Lucie Le Fevre, Brice Lortat-Jacob, Mehdi Marzouk, Camille d'Humieres, Emilie Rondinaud, Etienne Ruppe, Philippe Montravers, Jean-Francois Timsit, Laurence Armand-Lefevre
Summary: This study evaluated the performance and impact of the BioFire® FilmArray® Pneumonia plus Panel in COVID-19 ICU patients, demonstrating its potential role in improving antibiotic stewardship by facilitating timely administration of appropriate antibiotics and avoiding unnecessary prescriptions.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
(2021)
Article
Multidisciplinary Sciences
Camille d'Humieres, Juliette Patrier, Brice Lortat-Jacob, Alexy Tran-dinh, Lotfi Chemali, Naouale Maataoui, Emilie Rondinaud, Etienne Ruppe, Charles Burdet, Stephane Ruckly, Philippe Montravers, Jean-Francois Timsit, Laurence Armand-Lefevre
Summary: Among 197 COVID-19 patients hospitalized in ICU, 44.7% experienced bacterial infections, with pneumonia and bloodstream infections being the most frequent. Unusual findings include suspected bacterial translocations from the digestive tract and bacterial persistence in the lungs despite adequate therapy.
Article
Infectious Diseases
Donia Bouzid, Enrique Casalino, Jimmy Mullaert, Odile Laurent, Xavier Duval, Francois Xavier Lescure, Nathan Peiffer Smadja, Sarah Tubiana, Laurence Armand Lefevre, Diane Descamps, Nadhira Fidouh, Christophe Choquet, Jean-Christophe Lucet, Benoit Visseaux
Summary: Syndromic testing performed in the emergency department did not reduce the length of stay or antibiotic consumption in patients with acute respiratory illness, but was associated with an increased single-room assignment among patients in whom a significant respiratory pathogen was detected.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
(2021)
Article
Genetics & Heredity
Laurence Armand-Lefevre, Emilie Rondinaud, Dimitri Desvillechabrol, Jimmy Mullaert, Olivier Clermont, Marie Petitjean, Etienne Ruppe, Thomas Cokelaer, Christiane Bouchier, Olivier Tenaillon, Laurence Ma, Yasmine Nooroya, Sophie Matheron, Antoine Andremont, Erick Denamur, Sean P. Kennedy
Summary: This study investigated the long-term carriage of ESBL-E in travelers to tropical regions, revealing a correlation between the species and characteristics of Escherichia coli strains and the duration of colonization.
MICROBIAL GENOMICS
(2021)
Article
Microbiology
Milen Milenkov, Saida Rasoanandrasana, Lalaina Vonintsoa Rahajamanana, Rivo Solo Rakotomalala, Catherine Ainamalala Razafindrakoto, Christian Rafalimanana, Emile Ravelomandranto, Zakasoa Ravaoarisaina, Emilie Westeel, Marie Petitjean, Jimmy Mullaert, Olivier Clermont, Laurent Raskine, Luc Herve Samison, Hubert Endtz, Antoine Andremont, Erick Denamur, Florence Komurian-Pradel, Laurence Armand-Lefevre
Summary: This large-scale study reveals a high prevalence of ESBL-E. coli among pregnant women in four cities in Madagascar associated with warmth and rainfall. It shows the great diversity of E. coli disseminating throughout the country but also transmission of specific clones and spread of plasmids.
FRONTIERS IN MICROBIOLOGY
(2021)
Article
Microbiology
Camille d'Humieres, Nadia Gaia, Signara Gueye, Victoire de Lastours, Veronique Leflon-Guibout, Naouale Maataoui, Marion Duprilot, Marie Lecronier, Marc-Antoine Rousseau, Naura Gamany, Francois-Xavier Lescure, Olivia Senard, Laurene Deconinck, Marion Dollat, Valentina Isernia, Anne-Claire Le Hur, Marie Petitjean, Anissa Nazimoudine, Sylvie Le Gac, Solaya Chalal, Stephanie Ferreira, Vladimir Lazarevic, Ghislaine Guigon, Gaspard Gervasi, Laurence Armand-Lefevre, Jacques Schrenzel, Etienne Ruppe
Summary: Clinical metagenomics (CMg) plays an important role in the diagnosis of bone and joint infections (BJIs). Compared to conventional methods, CMg can detect more bacterial species and provide additional information. Additionally, CMg is valuable in guiding antibiotic therapy.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Stephane Lo, Isabelle Lolom, Valerie Goldstein, Marie Petitjean, Emilie Rondinaud, Vincent Bunel-Gourdy, Alexy Tran Dinh, Paul-Henri Wicky, Etienne Ruppe, Camille d'Humieres, Jean-Christophe Lucet, Laurence Armand-Lefevre
Summary: Multidrug-resistant Enterobacteriaceae are spreading in healthcare facilities and the community. The Bichat Claude Bernard hospital in Paris faced a prolonged outbreak of NDM-producing Enterobacteriaceae. Whole-genome sequencing (WGS) combined with epidemiological analysis revealed the mechanisms of dissemination and confirmed transmission cases.
MICROBIOLOGY SPECTRUM
(2022)
Letter
Medicine, General & Internal
Valentine Marie Ferre, Antoine Bachelard, Meryem Zaidi, Laurence Armand-Lefevre, Diane Descamps, Charlotte Charpentier, Jade Ghosn
ANNALS OF INTERNAL MEDICINE
(2022)
Article
Multidisciplinary Sciences
Amina Habib, Stephane Lo, Khanh Villageois-Tran, Marie Petitjean, Shaheen Akhtar Malik, Laurence Armand-Lefevre, Etienne Ruppe, Rabaab Zahra
Summary: The prevalence of CPE carriage in the Pakistani urban community was high and predominantly driven by the dissemination of a few E. Coli clones, with ST167 being the most common.
Article
Immunology
Alexy Tran-Dinh, Lina Slassi, Christian De Tymowski, Maksud Assadi, Sebastien Tanaka, Nathalie Zappella, Brice Lortat Jacob, Sylvain Jean-Baptiste, Enora Atchade, Yves Castier, Herve Mal, Pierre Mordant, Laurence Armand-Lefevre, Jonathan Messika, Nathalie Grall, Philippe Montravers
Summary: This study aimed to evaluate the efficacy of secondary prophylaxis with inhaled colistin in preventing the recurrence of Pseudomonas aeruginosa or extended-spectrum beta-lactamase-producing Enterobacterales pneumonia after lung transplantation. The results demonstrated that this approach significantly reduced the proportion of patients experiencing recurrence of these infections.
Article
Critical Care Medicine
Juliette Patrier, Khanh Villageois-Tran, Piotr Szychowiak, Stephane Ruckly, Remi Gschwind, Paul-Henri Wicky, Signara Gueye, Laurence Armand-Lefevre, Mehdi Marzouk, Romain Sonneville, Lila Bouadma, Marie Petitjean, Fariza Lamara, Etienne de Montmollin, Jean-Francois Timsit, Etienne Ruppe
Summary: This study found that elevated concentrations of opportunistic pathogens in the oropharyngeal and intestinal samples of critically ill SARS-CoV-2 patients are associated with higher mortality risk, independent of age, organ failure, and antibiotic therapy.
Article
Medicine, General & Internal
Guillaume Voiriot, Muriel Fartoukh, Isabelle Durand-Zaleski, Laurence Berard, Alexandra Rousseau, Laurence Armand-Lefevre, Charlotte Verdet, Laurent Argaud, Kada Klouche, Bruno Megarbane, Juliette Patrier, Jean-Christophe Richard, Jean Reignier, Carole Schwebel, Bertrand Souweine, Yacine Tandjaoui-Lambiotte, Tabassome Simon, Jean-Francois Timsit
Summary: The MULTI-CAP trial aims to compare the use of multiplex PCR and procalcitonin in reducing duration of antibiotic exposure in severe-CAP patients. The trial includes 20 centers and involves adult patients admitted for CAP, with a diagnosis based on clinical criteria and a newly appeared parenchymal infiltrate. Immunosuppressed patients are excluded. The intervention arm involves a combination of respiratory multiplex PCR and conventional microbiological investigations for microbiological diagnosis, with an algorithm for early antibiotic de-escalation or discontinuation based on results.
Article
Infectious Diseases
Laurene Deconinck, Remi Gschwind, Marie Petitjean, Signara Gueye, Veronique Leflon-Guibout, Naouale Maataoui, Emilie Rondinaud, Augustin Suard, Katell Gallais, Rainui Richaud, Adeline Fuchs, Bernard Iung, Soleiman Alkhoder, Sophie Ismael, Julia Herrou, Heloise Prie, Laurence Armand-Lefevre, Camille d'Humieres, Etienne Ruppe
Summary: This case report describes a 53-year-old fisherman from French Polynesia with preexisting valvular lesions who developed infective endocarditis caused by Thalassospira sp. The strain was identified using DNA sequencing methods but not by mass spectrometry.