Various modes of HP1a interactions with the euchromatic chromosome arms in Drosophila ovarian somatic cells

Drosophila ELYS regulates Dorsal dynamics during development

(2020) Saurabh Jayesh Kumar Mehta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance

(2019) Nahid Iglesias et al.   MOLECULAR CELL

Two distinct transcriptional controls triggered by nuclear Piwi-piRISCs in the Drosophila piRNA pathway

(2018) Kaoru Sato et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis

(2018) Marco La Fortezza et al.   Epigenetics & Chromatin

Key role of piRNAs in telomeric chromatin maintenance and telomere nuclear positioning in Drosophila germline

(2018) Elizaveta Radion et al.   Epigenetics & Chromatin

Heterochromatin protein 1a functions for piRNA biogenesis predominantly from pericentric and telomeric regions in Drosophila

(2018) Ryan Yee Wei Teo et al.   Nature Communications

The somatic piRNA pathway controls germline transposition over generations

(2018) Bridlin Barckmann et al.   NUCLEIC ACIDS RESEARCH

The Role of Maternal HP1a in Early Drosophila Embryogenesis via Regulation of Maternal Transcript Production

(2018) Ah Rume Park et al.   GENETICS

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The large fraction of heterochromatin in Drosophila neurons is bound by both B-type lamin and HP1a

(2018) Alexey V. Pindyurin et al.   Epigenetics & Chromatin

Phase separation drives heterochromatin domain formation

(2017) Amy R. Strom et al.   NATURE

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin

(2017) Adam G. Larson et al.   NATURE

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Piwi interacts with chromatin at nuclear pores and promiscuously binds nuclear transcripts in Drosophila ovarian somatic cells

(2017) Artem A. Ilyin et al.   NUCLEIC ACIDS RESEARCH

Chromatin state changes during neural development revealed by in vivo cell-type specific profiling

(2017) Owen J. Marshall et al.   Nature Communications

McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data

(2017) Michael G. Nelson et al.   G3-Genes Genomes Genetics

Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution

(2017) Yuh Chwen G Lee et al.   eLife

Piwi Modulates Chromatin Accessibility by Regulating Multiple Factors Including Histone H1 to Repress Transposons

(2016) Yuka W. Iwasaki et al.   MOLECULAR CELL

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Inducible DamID systems for genomic mapping of chromatin proteins inDrosophila

(2016) Alexey V. Pindyurin et al.   NUCLEIC ACIDS RESEARCH

High-throughput assessment of context-dependent effects of chromatin proteins

(2016) Laura Brueckner et al.   Epigenetics & Chromatin

Silencio/CG9754 connects the Piwi–piRNA complex to the cellular heterochromatin machinery

(2015) Grzegorz Sienski et al.   GENES & DEVELOPMENT

Panoramix enforces piRNA-dependent cotranscriptional silencing

(2015) Y. Yu et al.   SCIENCE

The Role of piRNA-Mediated Epigenetic Silencing in the Population Dynamics of Transposable Elements in Drosophila melanogaster

(2015) Yuh Chwen G. Lee   PLoS Genetics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Biochemical and structural properties of heterochromatin protein 1: understanding its role in chromatin assembly

(2014) G. Nishibuchi et al.   JOURNAL OF BIOCHEMISTRY

Human Heterochromatin Protein 1α Promotes Nucleosome Associations That Drive Chromatin Condensation

(2014) Abdelhamid M. Azzaz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Impact of nuclear Piwi elimination on chromatin state in Drosophila melanogaster ovaries

(2014) Mikhail S. Klenov et al.   NUCLEIC ACIDS RESEARCH

HP1a: a structural chromosomal protein regulating transcription

(2014) Joel C. Eissenberg et al.   TRENDS IN GENETICS

DNA microarray profiling of genes differentially regulated by three heterochromatin protein 1 (HP1) homologs in Drosophila

(2013) Dong Hoon Lee et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Developmental variation of the SUUR protein binding correlates with gene regulation and specific chromatin types in D. melanogaster

(2013) Daniil A. Maksimov et al.   CHROMOSOMA

Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression

(2013) J. M. Taliaferro et al.   GENES & DEVELOPMENT

Multiple roles for Piwi in silencing Drosophila transposons

(2013) N. V. Rozhkov et al.   GENES & DEVELOPMENT

DmGTSF1 is necessary for Piwi-piRISC-mediated transcriptional transposon silencing in the Drosophila ovary

(2013) H. Ohtani et al.   GENES & DEVELOPMENT

A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly

(2013) Daniele Canzio et al.   NATURE

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

HP1a, Su(var)3-9, SETDB1 and POF stimulate or repress gene expression depending on genomic position, gene length and expression pattern in Drosophila melanogaster

(2013) Lina E. Lundberg et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression

(2012) Grzegorz Sienski et al.   CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Ectopic assembly of heterochromatin in Drosophila melanogaster triggered by transposable elements

(2012) M. F. Sentmanat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The changing faces of HP1: From heterochromatin formation and gene silencing to euchromatic gene expression

(2011) So Hee Kwon et al.   BIOESSAYS

Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila

(2011) Filippo M. Cernilogar et al.   NATURE

Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line

(2011) S. H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A High-Resolution Whole-Genome Map of Key Chromatin Modifications in the Adult Drosophila melanogaster

(2011) Hang Yin et al.   PLoS Genetics

Nucleoporins Directly Stimulate Expression of Developmental and Cell-Cycle Genes Inside the Nucleoplasm

(2010) Bernike Kalverda et al.   CELL

Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells

(2010) Guillaume J. Filion et al.   CELL

Drosophila melanogaster heterochromatin protein HP1b plays important roles in transcriptional activation and development

(2010) Daoyong Zhang et al.   CHROMOSOMA

An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila

(2010) Daniel Olivieri et al.   EMBO JOURNAL

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

(2010) N. C. Riddle et al.   GENOME RESEARCH

Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

(2009) Colin D. Malone et al.   CELL

The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila

(2009) Delphine Fagegaltier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Heterochromatin Protein 1 (HP1a) Positively Regulates Euchromatic Gene Expression through RNA Transcript Association and Interaction with hnRNPs in Drosophila

(2009) Lucia Piacentini et al.   PLoS Genetics

An Investigation of Heterochromatin Domains on the Fourth Chromosome of Drosophila melanogaster

(2008) N. C. Riddle et al.   GENETICS

Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells

(2008) Yoshinori Kawamura et al.   NATURE

An endogenous small interfering RNA pathway in Drosophila

(2008) Benjamin Czech et al.   NATURE

Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells

(2008) M. Ghildiyal et al.   SCIENCE