MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data
出版年份 2020 全文链接
标题
MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data
作者
关键词
-
出版物
BMC GENOMICS
Volume 21, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-07-13
DOI
10.1186/s12864-020-06886-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The nf-core framework for community-curated bioinformatics pipelines
- (2020) Philip A. Ewels et al. NATURE BIOTECHNOLOGY
- BS-Seeker3: ultrafast pipeline for bisulfite sequencing
- (2018) Kevin Yu Yuan Huang et al. BMC BIOINFORMATICS
- Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data
- (2018) Anna Marco-Ramell et al. BMC BIOINFORMATICS
- METHimpute: imputation-guided construction of complete methylomes from WGBS data
- (2018) Aaron Taudt et al. BMC GENOMICS
- gemBS: high throughput processing for DNA methylation data from bisulfite sequencing
- (2018) Angelika Merkel et al. BIOINFORMATICS
- Nextflow enables reproducible computational workflows
- (2017) Paolo Di Tommaso et al. NATURE BIOTECHNOLOGY
- Single-cell DNA methylome sequencing of human preimplantation embryos
- (2017) Ping Zhu et al. NATURE GENETICS
- Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
- (2017) Chongyuan Luo et al. SCIENCE
- BRAT-nova: fast and accurate mapping of bisulfite-treated reads
- (2016) Elena Y. Harris et al. BIOINFORMATICS
- metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
- (2015) Frank Jühling et al. GENOME RESEARCH
- Human body epigenome maps reveal noncanonical DNA methylation variation
- (2015) Matthew D. Schultz et al. NATURE
- Lacking alignments? The next-generation sequencing mapper segemehl revisited
- (2014) Christian Otto et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
- (2013) Weilong Guo et al. BMC GENOMICS
- Comparison of alignment software for genome-wide bisulphite sequence data
- (2012) Aniruddha Chatterjee et al. NUCLEIC ACIDS RESEARCH
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
- SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
- (2012) Jovana Maksimovic et al. GENOME BIOLOGY
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Regularized gene selection in cancer microarray meta-analysis
- (2009) Shuangge Ma et al. BMC BIOINFORMATICS
- JBrowse: A next-generation genome browser
- (2009) M. E. Skinner et al. GENOME RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now