RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
出版年份 2020 全文链接
标题
RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
作者
关键词
-
出版物
BMC GENOMICS
Volume 21, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-07-06
DOI
10.1186/s12864-020-06862-x
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes
- (2020) Nikolaos Vakirlis et al. eLife
- The evolutionary traceability of a protein
- (2019) Arpit Jain et al. Genome Biology and Evolution
- A mechanism for temporary bioadhesion
- (2019) Julia Wunderer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Resilience to aging in the regeneration-capable flatworm Macrostomum lignano
- (2018) Stijn Mouton et al. AGING CELL
- A software tool ‘CroCo’ detects pervasive cross-species contamination in next generation sequencing data
- (2018) Paul Simion et al. BMC BIOLOGY
- A targeted in situ hybridization screen identifies putative seminal fluid proteins in a simultaneously hermaphroditic flatworm
- (2018) Michael Weber et al. BMC EVOLUTIONARY BIOLOGY
- Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing
- (2018) Laura E. MacConaill et al. BMC GENOMICS
- Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
- (2018) Maura Costello et al. BMC GENOMICS
- Organ specific gene expression in the regenerating tail of Macrostomum lignano
- (2018) Birgit Lengerer et al. DEVELOPMENTAL BIOLOGY
- A novel flatworm-specific gene implicated in reproduction in Macrostomum lignano
- (2018) Magda Grudniewska et al. Scientific Reports
- Experimental evidence for reduced male allocation under selfing in a simultaneously hermaphroditic animal
- (2018) Lennart Winkler et al. Biology Letters
- Self-fertilization, sex allocation and spermatogenesis kinetics in the hypodermically inseminating flatwormMacrostomum pusillum
- (2017) Athina Giannakara et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
- (2017) Robert M Waterhouse et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano
- (2017) Jakub Wudarski et al. Nature Communications
- New insights into the karyotype evolution of the free-living flatworm Macrostomum lignano (Platyhelminthes, Turbellaria)
- (2017) Kira S. Zadesenets et al. Scientific Reports
- A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors
- (2017) Donald M. Bryant et al. Cell Reports
- Chromosome Evolution in the Free-Living Flatworms: First Evidence of Intrachromosomal Rearrangements in Karyotype Evolution of Macrostomum lignano (Platyhelminthes, Macrostomida)
- (2017) Kira Zadesenets et al. Genes
- Adhesive organ regeneration in Macrostomum lignano
- (2016) Birgit Lengerer et al. BMC DEVELOPMENTAL BIOLOGY
- Quantifying episodes of sexual selection: Insights from a transparent worm with fluorescent sperm
- (2016) Lucas Marie-Orleach et al. EVOLUTION
- TransRate: reference-free quality assessment of de novo transcriptome assemblies
- (2016) Richard Smith-Unna et al. GENOME RESEARCH
- From molecules to mating: Rapid evolution and biochemical studies of reproductive proteins
- (2016) Damien B. Wilburn et al. Journal of Proteomics
- Standardized benchmarking in the quest for orthologs
- (2016) Adrian M Altenhoff et al. NATURE METHODS
- Evidence for Karyotype Polymorphism in the Free-Living Flatworm, Macrostomum lignano, a Model Organism for Evolutionary and Developmental Biology
- (2016) Kira S. Zadesenets et al. PLoS One
- Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano
- (2016) Magda Grudniewska et al. eLife
- AMAS: a fast tool for alignment manipulation and computing of summary statistics
- (2016) Marek L. Borowiec PeerJ
- Positional RNA-Seq identifies candidate genes for phenotypic engineering of sexual traits
- (2015) Roberto Arbore et al. Frontiers in Zoology
- The locus of sexual selection: moving sexual selection studies into the post-genomics era
- (2015) G. S. Wilkinson et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- The first multi-gene phylogeny of the Macrostomorpha sheds light on the evolution of sexual and asexual reproduction in basal Platyhelminthes
- (2015) Toon Janssen et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Genome and transcriptome of the regeneration-competent flatworm,Macrostomum lignano
- (2015) Kaja Wasik et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hypodermic self-insemination as a reproductive assurance strategy
- (2015) Steven A. Ramm et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
- (2015) Li Song et al. GigaScience
- Biological adhesion of the flatworm Macrostomum lignano relies on a duo-gland system and is mediated by a cell type-specific intermediate filament protein
- (2014) Birgit Lengerer et al. Frontiers in Zoology
- UpSet: Visualization of Intersecting Sets
- (2014) Alexander Lex et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
- (2014) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- SEX ALLOCATION ADJUSTMENT TO MATING GROUP SIZE IN A SIMULTANEOUS HERMAPHRODITE
- (2013) Tim Janicke et al. EVOLUTION
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Phenotypic engineering of sperm-production rate confirms evolutionary predictions of sperm competition theory
- (2013) K. Sekii et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Occurrence, costs and heritability of delayed selfing in a free-living flatworm
- (2012) S. A. Ramm et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments
- (2012) Nagarjun Vijay et al. MOLECULAR ECOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- Mating behavior and the evolution of sperm design
- (2011) L. Scharer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Goings-on inside a worm: functional hypotheses derived from sexual conflict thinking
- (2010) DITA B. VIZOSO et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Sperm Proteomics Reveals Intensified Selection on Mouse Sperm Membrane and Acrosome Genes
- (2010) Steve Dorus et al. MOLECULAR BIOLOGY AND EVOLUTION
- Independent filtering increases detection power for high-throughput experiments
- (2010) R. Bourgon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Demographic analysis reveals gradual senescence in the flatworm Macrostomum lignano
- (2009) Stijn Mouton et al. Frontiers in Zoology
- Proteomics and Comparative Genomic Investigations Reveal Heterogeneity in Evolutionary Rate of Male Reproductive Proteins in Mice (Mus domesticus)
- (2009) M. D. Dean et al. MOLECULAR BIOLOGY AND EVOLUTION
- Flatworm stem cells and the germ line: Developmental and evolutionary implications of macvasa expression in Macrostomum lignano
- (2008) Daniela Pfister et al. DEVELOPMENTAL BIOLOGY
- Large-scale assignment of orthology: back to phylogenetics?
- (2008) Toni Gabaldón GENOME BIOLOGY
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