Weighted minimizer sampling improves long read mapping

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

(2019) Alexander T. Dilthey et al.   Nature Communications

Asymptotically optimal minimizers schemes

(2018) Guillaume Marçais et al.   BIOINFORMATICS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

(2017) Valerie A. Schneider et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

A hybrid cloud read aligner based on MinHash and kmer voting that preserves privacy

(2017) Victoria Popic et al.   Nature Communications

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

(2016) Heng Li   BIOINFORMATICS

On the Representation of De Bruijn Graphs

(2015) Rayan Chikhi et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

(2015) Konstantin Berlin et al.   NATURE BIOTECHNOLOGY

Entropy-Scaling Search of Massive Biological Data

(2015) Y. William Yu et al.   Cell Systems

PBSIM: PacBio reads simulator—toward accurate genome assembly

(2012) Yukiteru Ono et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Gentle Masking of Low-Complexity Sequences Improves Homology Search

(2011) Martin C. Frith   PLoS One