Characterization of bacterial community in intestinal and rearing water ofPenaeus monodondiffering growth performances in outdoor and indoor ponds

Penaeus monodonprovides a high-quality protein source for humanity, and pond cultured shrimp often presents asynchronous growth. Microbial communities are important for the digestion and immunity of shrimp. Therefore, in this study, we investigated the bacterial characteristics of the intestine and rearing water of asynchronously growingP. monodonthat were cultured in outdoor and indoor pond respectively. The results showed that the bacterial community of the rearing water was more complex than that of the intestine; the fast-growing shrimp in the indoor pond had higher intestinal bacterial diversity. Besides, the dominant bacterial composition of the water was more complex than that of the intestinal. Specifically, the abundance of Proteobacteria in the intestine was consistent with the growth performance of shrimp in the outdoor pond, which was exactly the opposite in the indoor pond. At the genus level, two cyanobacteria,LimnothrixandCyanobium PCC-6307, were dominant in the indoor and outdoor water respectively. In the outdoor pond,Bacilluswas dominant in the slow-growing shrimp intestines, whileVibriowas dominant in the fast-growing shrimp. The intestinal microbes of the fast-growing shrimp had higher proteasome metabolic capacity. These results can provide new insights into microbiome characteristics involved in the asynchronous growth of shrimp.