MOTA: Network-Based Multi-Omic Data Integration for Biomarker Discovery

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)

(2019) Huaiyu Mi et al.   Nature Protocols

Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms

(2019) Joanna Zyla et al.   BIOINFORMATICS

Japanese version of The Cancer Genome Atlas, JCGA, established using fresh frozen tumors obtained from 5143 cancer patients

(2019) Takeshi Nagashima et al.   CANCER SCIENCE

Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology

(2018) Tao Huan et al.   ANALYTICAL CHEMISTRY

Discriminative Multiple Canonical Correlation Analysis for Information Fusion

(2018) Lei Gao et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Modeling correlated marker effects in genome-wide prediction via Gaussian concentration graph models

(2018) Carlos Alberto Martínez et al.   JOURNAL OF THEORETICAL BIOLOGY

Identification of race-associated metabolite biomarkers for hepatocellular carcinoma in patients with liver cirrhosis and hepatitis C virus infection

(2018) Cristina Di Poto et al.   PLoS One

A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data

(2018) Gaurav Pandey et al.   Scientific Reports

Deep Learning Accurately Predicts Estrogen Receptor Status in Breast Cancer Metabolomics Data

(2017) Fadhl M. Alakwaa et al.   JOURNAL OF PROTEOME RESEARCH

Regularized Generalized Canonical Correlation Analysis: A Framework for Sequential Multiblock Component Methods

(2017) Michel Tenenhaus et al.   PSYCHOMETRIKA

Joint estimation of multiple dependent Gaussian graphical models with applications to mouse genomics

(2016) Yuying Xie et al.   BIOMETRIKA

Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery

(2016) Minkun Wang et al.   IEEE Journal of Biomedical and Health Informatics

Elastin in the Liver

(2016) Jiří Kanta   Frontiers in Physiology

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

(2016) Hugo Varet et al.   PLoS One

Effect of vitamin E supplementation on serum C-reactive protein level: a meta-analysis of randomized controlled trials

(2015) S Saboori et al.   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Metabolomics in cancer biomarker discovery: Current trends and future perspectives

(2013) Emily G. Armitage et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Novel Loci for Metabolic Networks and Multi-Tissue Expression Studies Reveal Genes for Atherosclerosis

(2012) Michael Inouye et al.   PLoS Genetics

Visualising associations between paired ‘omics’ data sets

(2012) Ignacio González et al.   BioData Mining

Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data

(2011) Jan Krumsiek et al.   BMC Systems Biology

From ‘differential expression’ to ‘differential networking’ – identification of dysfunctional regulatory networks in diseases

(2010) Alberto de la Fuente   TRENDS IN GENETICS

Sparse canonical methods for biological data integration: application to a cross-platform study

(2009) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

Alteration of protein glycosylation in liver diseases

(2008) Bram Blomme et al.   JOURNAL OF HEPATOLOGY