Genome mining of a fungal endophyte of Taxus yunnanensis (Chinese yew) leads to the discovery of a novel azaphilone polyketide, lijiquinone

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Re-evaluation of Mycoleptodiscus species and morphologically similar fungi

(2019) M. Hernández-Restrepo et al.   PERSOONIA

Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae

(2019) Yang Yang et al.   BMC GENOMICS

Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand

(2018) Saowaluck Tibpromma et al.   MycoKeys

Fungal Planet description sheets: 785– 867

(2018) P.W. Crous et al.   PERSOONIA

Combined genetic and bioactivity-based prioritization leads to the isolation of an endophyte-derived antimycobacterial compound

(2016) A. Alvin et al.   JOURNAL OF APPLIED MICROBIOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Combinatorial Generation of Chemical Diversity by Redox Enzymes in Chaetoviridin Biosynthesis

(2016) Michio Sato et al.   ORGANIC LETTERS

SnPKS19Encodes the Polyketide Synthase for Alternariol Mycotoxin Biosynthesis in the Wheat Pathogen Parastagonospora nodorum

(2015) Yit-Heng Chooi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic and transcriptomic analysis of the endophytic fungus Pestalotiopsis fici reveals its lifestyle and high potential for synthesis of natural products

(2015) Xiuna Wang et al.   BMC GENOMICS

Biochemical and Structural Basis for Controlling Chemical Modularity in Fungal Polyketide Biosynthesis

(2015) Jaclyn M. Winter et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Natural product and natural product derived drugs in clinical trials

(2014) Mark S. Butler et al.   NATURAL PRODUCT REPORTS

The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte

(2014) Xi-Hui Xu et al.   Scientific Reports

Alternariol 9-O-methyl ether dimethyl sulfoxide monosolvate

(2013) Sreekanth Dasari et al.   ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE

Azaphilones: Chemistry and Biology

(2013) Jin-Ming Gao et al.   CHEMICAL REVIEWS

An Efficient System for Heterologous Expression of Secondary Metabolite Genes in Aspergillus nidulans

(2013) Yi-Ming Chiang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

(2013) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Characterization of a Silent Azaphilone Gene Cluster from Aspergillus niger ATCC 1015 Reveals a Hydroxylation-Mediated Pyran-Ring Formation

(2012) Angelica O. Zabala et al.   CHEMISTRY & BIOLOGY

Compatibility art of traditional Chinese medicine: From the perspective of herb pairs

(2012) Shengpeng Wang et al.   JOURNAL OF ETHNOPHARMACOLOGY

Natural Products As Sources of New Drugs over the 30 Years from 1981 to 2010

(2012) David J. Newman et al.   JOURNAL OF NATURAL PRODUCTS

Identification and Characterization of the Chaetoviridin and Chaetomugilin Gene Cluster in Chaetomium globosum Reveal Dual Functions of an Iterative Highly-Reducing Polyketide Synthase

(2012) Jaclyn M. Winter et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Culturable Endophytes of Medicinal Plants and the Genetic Basis for Their Bioactivity

(2012) Kristin I Miller et al.   MICROBIAL ECOLOGY

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Investigation of the Biosynthetic Potential of Endophytes in Traditional Chinese Anticancer Herbs

(2012) Kristin I. Miller et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

FT-ICR-MS Characterization of Intermediates in the Biosynthesis of the α-Methylbutyrate Side Chain of Lovastatin by the 277 kDa Polyketide Synthase LovF

(2010) Michael J. Meehan et al.   BIOCHEMISTRY

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

(2010) Gaurav Vaidya et al.   CLADISTICS

Fungal endophytes from higher plants: a prolific source of phytochemicals and other bioactive natural products

(2010) Amal H. Aly et al.   FUNGAL DIVERSITY

A class-wide phylogenetic assessment of Dothideomycetes

(2010) C.L. Schoch et al.   STUDIES IN MYCOLOGY

Chaetomugilins, New Selectively Cytotoxic Metabolites, Produced by a Marine Fish-derived Chaetomium Species

(2009) Muroga Yasuhide et al.   JOURNAL OF ANTIBIOTICS

Acyltransferase Mediated Polyketide Release from a Fungal Megasynthase

(2009) Xinkai Xie et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Gene Cluster Containing Two Fungal Polyketide Synthases Encodes the Biosynthetic Pathway for a Polyketide, Asperfuranone, inAspergillus nidulans

(2009) Yi-Ming Chiang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

High-Throughput Screening Platform for Anticancer Therapeutic Drug Cytotoxicity

(2008) Bhagwant Kaur Sekhon et al.   ASSAY AND DRUG DEVELOPMENT TECHNOLOGIES

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Deconstruction of Iterative Multidomain Polyketide Synthase Function

(2008) J. M. Crawford et al.   SCIENCE