In Vivo Thermodynamic Analysis of Glycolysis in Clostridium thermocellum and Thermoanaerobacterium saccharolyticum Using 13C and 2H Tracers
出版年份 2020 全文链接
标题
In Vivo Thermodynamic Analysis of Glycolysis in Clostridium thermocellum and Thermoanaerobacterium saccharolyticum Using 13C and 2H Tracers
作者
关键词
-
出版物
mSystems
Volume 5, Issue 2, Pages -
出版商
American Society for Microbiology
发表日期
2020-03-16
DOI
10.1128/msystems.00736-19
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments
- (2019) Di Du et al. BMC BIOINFORMATICS
- 2H and 13C metabolic flux analysis elucidates in vivo thermodynamics of the ED pathway in Zymomonas mobilis
- (2019) Tyler B. Jacobson et al. METABOLIC ENGINEERING
- Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum
- (2019) Satyakam Dash et al. METABOLIC ENGINEERING
- Near-equilibrium glycolysis supports metabolic homeostasis and energy yield
- (2019) Junyoung O. Park et al. Nature Chemical Biology
- Reversibility of citrate synthase allows autotrophic growth of a thermophilic bacterium
- (2018) Achim Mall et al. SCIENCE
- A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile
- (2018) Takuro Nunoura et al. SCIENCE
- Characterization of the Clostridium thermocellum AdhE, NfnAB, Ferredoxin and Pfor proteins for their ability to support high titer ethanol production in Thermoanaerobacterium saccharolyticum
- (2018) Jingxuan Cui et al. METABOLIC ENGINEERING
- Isotope-Assisted Metabolite Analysis Sheds Light on Central Carbon Metabolism of a Model Cellulolytic Bacterium Clostridium thermocellum
- (2018) Wei Xiong et al. Frontiers in Microbiology
- New approach for understanding genome variations in KEGG
- (2018) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Genomes of rumen bacteria encode atypical pathways for fermenting hexoses to short-chain fatty acids
- (2017) Timothy J. Hackmann et al. ENVIRONMENTAL MICROBIOLOGY
- Engineering electron metabolism to increase ethanol production in Clostridium thermocellum
- (2017) Jonathan Lo et al. METABOLIC ENGINEERING
- Glycolysis without pyruvate kinase in Clostridium thermocellum
- (2017) Daniel G. Olson et al. METABOLIC ENGINEERING
- Deletion of Type I glutamine synthetase deregulates nitrogen metabolism and increases ethanol production in Clostridium thermocellum
- (2017) Thomas Rydzak et al. METABOLIC ENGINEERING
- The ethanol pathway from Thermoanaerobacterium saccharolyticum improves ethanol production in Clostridium thermocellum
- (2017) Shuen Hon et al. METABOLIC ENGINEERING
- Ferredoxin:NAD+Oxidoreductase of Thermoanaerobacterium saccharolyticum and Its Role in Ethanol Formation
- (2016) Liang Tian et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Strain and bioprocess improvement of a thermophilic anaerobe for the production of ethanol from wood
- (2016) Christopher D. Herring et al. Biotechnology for Biofuels
- Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum
- (2016) Liang Tian et al. Biotechnology for Biofuels
- DMR (deacetylation and mechanical refining) processing of corn stover achieves high monomeric sugar concentrations (230 g L−1) during enzymatic hydrolysis and high ethanol concentrations (>10% v/v) during fermentation without hydrolysate purification or concentration
- (2016) Xiaowen Chen et al. Energy & Environmental Science
- Very high gravity ethanol and fatty acid production of Zymomonas mobilis without amino acid and vitamin
- (2016) Haoyong Wang et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Metabolite concentrations, fluxes and free energies imply efficient enzyme usage
- (2016) Junyoung O Park et al. Nature Chemical Biology
- OptSSeq: High-Throughput Sequencing Readout of Growth Enrichment Defines Optimal Gene Expression Elements for Homoethanologenesis
- (2016) Indro Neil Ghosh et al. ACS Synthetic Biology
- The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization
- (2016) Elad Noor et al. PLoS Computational Biology
- Zymomonas mobilis as a model system for production of biofuels and biochemicals
- (2016) Shihui Yang et al. Microbial Biotechnology
- Reassessment of the Transhydrogenase/Malate Shunt Pathway in Clostridium thermocellum ATCC 27405 through Kinetic Characterization of Malic Enzyme and Malate Dehydrogenase
- (2015) M. Taillefer et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Phenolic Amides Are Potent Inhibitors ofDe NovoNucleotide Biosynthesis
- (2015) Tippapha Pisithkul et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Physiological roles of pyruvate ferredoxin oxidoreductase and pyruvate formate-lyase in Thermoanaerobacterium saccharolyticum JW/SL-YS485
- (2015) Jilai Zhou et al. Biotechnology for Biofuels
- Genome-scale resources for Thermoanaerobacterium saccharolyticum
- (2015) Devin H Currie et al. BMC Systems Biology
- Cofactor Specificity of the Bifunctional Alcohol and Aldehyde Dehydrogenase (AdhE) in Wild-Type and Mutant Clostridium thermocellum and Thermoanaerobacterium saccharolyticum
- (2015) Tianyong Zheng et al. JOURNAL OF BACTERIOLOGY
- Elimination of formate production in Clostridium thermocellum
- (2015) Thomas Rydzak et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Profile of Secreted Hydrolases, Associated Proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the Degradation of Hemicellulose
- (2014) D. H. Currie et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Insights into electron flux through manipulation of fermentation conditions and assessment of protein expression profiles in Clostridium thermocellum
- (2014) Thomas Rydzak et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- INCA: a computational platform for isotopically non-stationary metabolic flux analysis
- (2014) J. D. Young BIOINFORMATICS
- The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading
- (2014) Evert K Holwerda et al. Biotechnology for Biofuels
- Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain
- (2014) Kelsey L Yee et al. Biotechnology for Biofuels
- Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism
- (2014) Elad Noor et al. PLoS Computational Biology
- Atypical Glycolysis in Clostridium thermocellum
- (2013) Jilai Zhou et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metabolic engineering of yeast for production of fuels and chemicals
- (2013) Jens Nielsen et al. CURRENT OPINION IN BIOTECHNOLOGY
- COMPLETE-MFA: Complementary parallel labeling experiments technique for metabolic flux analysis
- (2013) Robert W. Leighty et al. METABOLIC ENGINEERING
- Kinetic modelling of the Zymomonas mobilis Entner-Doudoroff pathway: insights into control and functionality
- (2013) R. Rutkis et al. MICROBIOLOGY-SGM
- Steady-State Metabolite Concentrations Reflect a Balance between Maximizing Enzyme Efficiency and Minimizing Total Metabolite Load
- (2013) Naama Tepper et al. PLoS One
- Glycolytic strategy as a tradeoff between energy yield and protein cost
- (2013) A. Flamholz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Consistent Estimation of Gibbs Energy Using Component Contributions
- (2013) Elad Noor et al. PLoS Computational Biology
- Current knowledge of the Escherichia coli phosphoenolpyruvate–carbohydrate phosphotransferase system: peculiarities of regulation and impact on growth and product formation
- (2012) Adelfo Escalante et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation
- (2012) Wolfgang Buckel et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- An integrated open framework for thermodynamics of reactions that combines accuracy and coverage
- (2012) Elad Noor et al. BIOINFORMATICS
- Carbon catabolite repression in Thermoanaerobacterium saccharolyticum
- (2012) Vasiliki Tsakraklides et al. Biotechnology for Biofuels
- Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations
- (2012) Yongchao Li et al. Biotechnology for Biofuels
- Linking genome content to biofuel production yields: a meta-analysis of major catabolic pathways among select H2 and ethanol-producing bacteria
- (2012) Carlo R Carere et al. BMC MICROBIOLOGY
- Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression
- (2012) Thomas Rydzak et al. BMC MICROBIOLOGY
- Redirecting carbon flux through exogenous pyruvate kinase to achieve high ethanol yields in Clostridium thermocellum
- (2012) Yu Deng et al. METABOLIC ENGINEERING
- Rethinking glycolysis: on the biochemical logic of metabolic pathways
- (2012) Arren Bar-Even et al. Nature Chemical Biology
- High Ethanol Titers from Cellulose by Using Metabolically Engineered Thermophilic, Anaerobic Microbes
- (2011) D. Aaron Argyros et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405
- (2011) Thomas Rydzak et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Improving the ethanol yield by reducing glycerol formation using cofactor regulation in Saccharomyces cerevisiae
- (2011) Liang Zhang et al. BIOTECHNOLOGY LETTERS
- Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation
- (2011) Babu Raman et al. BMC MICROBIOLOGY
- Riboneogenesis in Yeast
- (2011) Michelle F. Clasquin et al. CELL
- Recent progress in consolidated bioprocessing
- (2011) Daniel G Olson et al. CURRENT OPINION IN BIOTECHNOLOGY
- eQuilibrator--the biochemical thermodynamics calculator
- (2011) A. Flamholz et al. NUCLEIC ACIDS RESEARCH
- Metabolomic Analysis and Visualization Engine for LC−MS Data
- (2010) Eugene Melamud et al. ANALYTICAL CHEMISTRY
- Comparing the fermentation performance of Escherichia coli KO11, Saccharomyces cerevisiae 424A(LNH-ST) and Zymomonas mobilis AX101 for cellulosic ethanol production
- (2010) Ming W Lau et al. Biotechnology for Biofuels
- Systems-Level Metabolic Flux Profiling Elucidates a Complete, Bifurcated Tricarboxylic Acid Cycle in Clostridium acetobutylicum
- (2010) D. Amador-Noguez et al. JOURNAL OF BACTERIOLOGY
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
- (2009) Bryson D Bennett et al. Nature Chemical Biology
- Simultaneous Quantification of Metabolites Involved in Central Carbon and Energy Metabolism Using Reversed-Phase Liquid Chromatography−Mass Spectrometry and in Vitro13C Labeling
- (2008) Wen-Chu Yang et al. ANALYTICAL CHEMISTRY
- Elucidation of an Alternate Isoleucine Biosynthesis Pathway in Geobacter sulfurreducens
- (2008) C. Risso et al. JOURNAL OF BACTERIOLOGY
- Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach
- (2008) Bryson D Bennett et al. Nature Protocols
- Metabolic engineering of a thermophilic bacterium to produce ethanol at high yield
- (2008) A. J. Shaw et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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