RALF1-FERONIA complex affects splicing dynamics to modulate stress responses and growth in plants

The RALF1–FERONIA Complex Phosphorylates eIF4E1 to Promote Protein Synthesis and Polar Root Hair Growth

(2020) Sirui Zhu et al.   Molecular Plant

Mechanisms of RALF peptide perception by a heterotypic receptor complex

(2019) Yu Xiao et al.   NATURE

How CrRLK1L Receptor Complexes Perceive RALF Signals

(2019) Zengxiang Ge et al.   TRENDS IN PLANT SCIENCE

Plant Malectin-Like Receptor Kinases: From Cell Wall Integrity to Immunity and Beyond

(2018) Christina Maria Franck et al.   Annual Review of Plant Biology

FERONIA Receptor Kinase Contributes to Plant Immunity by Suppressing Jasmonic Acid Signaling in Arabidopsis thaliana

(2018) Hongqing Guo et al.   CURRENT BIOLOGY

EBP1 nuclear accumulation negatively feeds back on FERONIA-mediated RALF1 signaling

(2018) Chiyu Li et al.   PLOS BIOLOGY

FERONIA Receptor Kinase at the Crossroads of Hormone Signaling and Stress Responses

(2017) Hongdong Liao et al.   PLANT AND CELL PHYSIOLOGY

Complex regulation of plant sex by peptides

(2017) Martin Stegmann et al.   SCIENCE

The receptor kinase FER is a RALF-regulated scaffold controlling plant immune signaling

(2017) Martin Stegmann et al.   SCIENCE

Molecular basis for blue light-dependent phosphorylation of Arabidopsis cryptochrome 2

(2017) Qing Liu et al.   Nature Communications

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Metabolic Signaling Regulates Alternative Splicing during Photomorphogenesis

(2016) Kathleen L. Farquharson   PLANT CELL

The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability

(2016) Raquel F. Carvalho et al.   PLANT CELL

Receptor kinase complex transmits RALF peptide signal to inhibit root growth inArabidopsis

(2016) Changqing Du et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FERONIA interacts with ABI2-type phosphatases to facilitate signaling cross-talk between abscisic acid and RALF peptide inArabidopsis

(2016) Jia Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AtJAC1 Regulates Nuclear Accumulation of GRP7, Influencing RNA Processing of FLC Antisense Transcripts and Flowering Time in Arabidopsis

(2015) Jun Xiao et al.   PLANT PHYSIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Splicing of Receptor-Like Kinase-Encoding SNC4 and CERK1 is Regulated by Two Conserved Splicing Factors that Are Required for Plant Immunity

(2014) Zhibin Zhang et al.   Molecular Plant

Context-dependent control of alternative splicing by RNA-binding proteins

(2014) Xiang-Dong Fu et al.   NATURE REVIEWS GENETICS

FourArabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress

(2014) TAKUYA YOSHIDA et al.   PLANT CELL AND ENVIRONMENT

The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance

(2014) Chae Woo Lim et al.   PLANT CELL REPORTS

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

(2014) Shihao Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Peptide Hormone and Its Receptor Protein Kinase Regulate Plant Cell Expansion

(2014) M. Haruta et al.   SCIENCE

Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7

(2013) Valerie Nicaise et al.   EMBO JOURNAL

Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation

(2013) Anna Golisz et al.   NUCLEIC ACIDS RESEARCH

Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses

(2013) D. Staiger et al.   PLANT CELL

ABA and the ubiquitin E3 ligase KEEP ON GOING affect proteolysis of theArabidopsis thalianatranscription factors ABF1 and ABF3

(2013) Yi-Tze Chen et al.   PLANT JOURNAL

An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana

(2012) Corinna Streitner et al.   NUCLEIC ACIDS RESEARCH

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

(2012) A. B. James et al.   PLANT CELL

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

(2009) Mo Chen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Role of plant RNA-binding proteins in development, stress response and genome organization

(2009) Zdravko J. Lorković   TRENDS IN PLANT SCIENCE

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

(2008) Jan C. Schöning et al.   NUCLEIC ACIDS RESEARCH

Glycine-rich RNA-binding protein7 affects abiotic stress responses by regulating stomata opening and closing inArabidopsis thaliana

(2008) Jin Sun Kim et al.   PLANT JOURNAL

The small glycine-rich RNA binding protein At GRP7 promotes floral transition in Arabidopsis thaliana

(2008) Corinna Streitner et al.   PLANT JOURNAL

Interactions between the S-Domain Receptor Kinases and AtPUB-ARM E3 Ubiquitin Ligases Suggest a Conserved Signaling Pathway in Arabidopsis

(2008) M. A. Samuel et al.   PLANT PHYSIOLOGY