Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis

Association between periodontal pathogens and systemic disease

(2019) Fiona Q. Bui et al.   Biomedical Journal

Porphyromonas gingivalis in Alzheimer’s disease brains: Evidence for disease causation and treatment with small-molecule inhibitors

(2019) Stephen S. Dominy et al.   Science Advances

A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane

(2019) Nuria Gómez-Santos et al.   Nature Communications

Ternary structure of the outer membrane transporter FoxA with resolved signalling domain provides insights into TonB-mediated siderophore uptake

(2019) Inokentijs Josts et al.   eLife

The complex of ferric-enterobactin with its transporter from Pseudomonas aeruginosa suggests a two-site model

(2019) Lucile Moynié et al.   Nature Communications

TonB-dependent transport by the gut microbiota: novel aspects of an old problem

(2018) David N Bolam et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

CASTp 3.0: computed atlas of surface topography of proteins

(2018) Wei Tian et al.   NUCLEIC ACIDS RESEARCH

DIALS: implementation and evaluation of a new integration package

(2018) Graeme Winter et al.   Acta Crystallographica Section D-Structural Biology

Collection, pre-processing and on-the-fly analysis of data for high-resolution, single-particle cryo-electron microscopy

(2018) Rebecca F. Thompson et al.   Nature Protocols

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

Structural basis for nutrient acquisition by dominant members of the human gut microbiota

(2017) Amy J. Glenwright et al.   NATURE

The case for periodontitis in the pathogenesis of rheumatoid arthritis

(2017) Jan Potempa et al.   Nature Reviews Rheumatology

Gating of TonB-dependent transporters by substrate-specific forced remodelling

(2017) Samuel J. Hickman et al.   Nature Communications

Identification of Streptococcus cristatus peptides that repress expression of virulence genes in Porphyromonas gingivalis

(2017) Meng-Hsuan Ho et al.   Scientific Reports

TonB-Dependent Heme/Hemoglobin Utilization by Caulobacter crescentus HutA

(2016) Heloise Balhesteros et al.   JOURNAL OF BACTERIOLOGY

APorphyromonas gingivalisPeriplasmic Novel Exopeptidase, Acylpeptidyl Oligopeptidase, ReleasesN-Acylated Di- and Tripeptides from Oligopeptides

(2016) Takayuki K. Nemoto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gctf: Real-time CTF determination and correction

(2016) Kai Zhang   JOURNAL OF STRUCTURAL BIOLOGY

Update on Prevalence of Periodontitis in Adults in the United States: NHANES 2009 to 2012

(2015) Paul I. Eke et al.   JOURNAL OF PERIODONTOLOGY

Structure of RagB, a major immunodominant outer-membrane surface receptor antigen ofPorphyromonas gingivalis

(2015) T. Goulas et al.   Molecular Oral Microbiology

Glycan complexity dictates microbial resource allocation in the large intestine

(2015) Artur Rogowski et al.   Nature Communications

Development of a novel plasmid vector pTIO-1 adapted for electrotransformation of Porphyromonas gingivalis

(2014) Junpei Tagawa et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Decision making inxia2

(2013) Graeme Winter et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The link between chronic periodontitis and COPD: a common role for the neutrophil?

(2013) Adam KH Usher et al.   BMC Medicine

Influence of electron dose rate on electron counting images recorded with the K2 camera

(2013) Xueming Li et al.   JOURNAL OF STRUCTURAL BIOLOGY

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Glycan recognition by the Bacteroidetes Sus-like systems

(2012) David N Bolam et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

TonB-Dependent Transporters: Regulation, Structure, and Function

(2010) Nicholas Noinaj et al.   Annual Review of Microbiology

Conformational Exchange in a Membrane Transport Protein Is Altered in Protein Crystals

(2010) Daniel M. Freed et al.   BIOPHYSICAL JOURNAL

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

CHARMM-GUI: A web-based graphical user interface for CHARMM

(2008) Sunhwan Jo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Starch Catabolism by a Prominent Human Gut Symbiont Is Directed by the Recognition of Amylose Helices

(2008) Nicole M. Koropatkin et al.   STRUCTURE