High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibers

Cell-type-specific metabolic labeling, detection and identification of nascent proteomes in vivo

(2019) Beatriz Alvarez-Castelao et al.   Nature Protocols

Single Muscle Fiber Proteomics Reveals Distinct Protein Changes in Slow and Fast Fibers during Muscle Atrophy

(2018) Franziska Lang et al.   JOURNAL OF PROTEOME RESEARCH

Instant Clue: A Software Suite for Interactive Data Visualization and Analysis

(2018) Hendrik Nolte et al.   Scientific Reports

A mutation in the TMEM65 gene results in mitochondrial myopathy with severe neurological manifestations

(2017) Aisha Nazli et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Phosphorylation of the regulatory light chain of myosin in striated muscle: methodological perspectives

(2016) Haiyang Yu et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Mechanism of super-assembly of respiratory complexes III and IV

(2016) Sara Cogliati et al.   NATURE

Structure of mammalian respiratory complex I

(2016) Jiapeng Zhu et al.   NATURE

Accessory subunits are integral for assembly and function of human mitochondrial complex I

(2016) David A. Stroud et al.   NATURE

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

Age modifies respiratory complex I and protein homeostasis in a muscle type-specific manner

(2015) Shane E. Kruse et al.   AGING CELL

Intramitochondrial adenylyl cyclase controls the turnover of nuclear-encoded subunits and activity of mammalian complex I of the respiratory chain

(2015) Domenico De Rasmo et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Mitochondrial Dynamics Is a Distinguishing Feature of Skeletal Muscle Fiber Types and Regulates Organellar Compartmentalization

(2015) Prashant Mishra et al.   Cell Metabolism

Single muscle fiber proteomics reveals unexpected mitochondrial specialization

(2015) M. Murgia et al.   EMBO REPORTS

Dynamics of zebrafish fin regeneration using a pulsed SILAC approach

(2015) Hendrik Nolte et al.   PROTEOMICS

Mitochondrial specialization revealed by single muscle fiber proteomics: focus on the Krebs cycle

(2015) S. Schiaffino et al.   SCANDINAVIAN JOURNAL OF MEDICINE & SCIENCE IN SPORTS

Evolutionarily conserved intercalated disc protein Tmem65 regulates cardiac conduction and connexin 43 function

(2015) Parveen Sharma et al.   Nature Communications

Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart

(2014) Dao-Fu Dai et al.   AGING CELL

Skeletal Muscle: A Brief Review of Structure and Function

(2014) Walter R. Frontera et al.   CALCIFIED TISSUE INTERNATIONAL

A simplified immunohistochemical classification of skeletal muscle fibres in mouse

(2014) M. Kammoun et al.   EUROPEAN JOURNAL OF HISTOCHEMISTRY

Activation of MAPK overrides the termination of myelin growth and replaces Nrg1/ErbB3 signals during Schwann cell development and myelination

(2014) M. E. Sheean et al.   GENES & DEVELOPMENT

Atrogin-1 deficiency promotes cardiomyopathy and premature death via impaired autophagy

(2014) Tania Zaglia et al.   JOURNAL OF CLINICAL INVESTIGATION

A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards

(2014) Jacek R. Wiśniewski et al.   MOLECULAR & CELLULAR PROTEOMICS

Ultrasensitive proteome analysis using paramagnetic bead technology

(2014) C. S. Hughes et al.   Molecular Systems Biology

Low abundance of the matrix arm of complex I in mitochondria predicts longevity in mice

(2014) Satomi Miwa et al.   Nature Communications

TMEM65 is a mitochondrial inner-membrane protein

(2014) Naotaka Nishimura et al.   PeerJ

Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2

(2013) Siddhesh Aras et al.   NUCLEIC ACIDS RESEARCH

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

(2012) Juergen Cox et al.   BMC BIOINFORMATICS

Subunit-specific Incorporation Efficiency and Kinetics in Mitochondrial Complex I Homeostasis

(2012) Cindy E. J. Dieteren et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rapid Determination of Myosin Heavy Chain Expression in Rat, Mouse, and Human Skeletal Muscle Using Multicolor Immunofluorescence Analysis

(2012) Darin Bloemberg et al.   PLoS One

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

On Marathons and Sprints: An Integrated Quantitative Proteomics and Transcriptomics Analysis of Differences Between Slow and Fast Muscle Fibers

(2011) Hannes C. A. Drexler et al.   MOLECULAR & CELLULAR PROTEOMICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Fiber Types in Mammalian Skeletal Muscles

(2011) Stefano Schiaffino et al.   PHYSIOLOGICAL REVIEWS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Muscle-Specific Adaptations, Impaired Oxidative Capacity and Maintenance of Contractile Function Characterize Diet-Induced Obese Mouse Skeletal Muscle

(2009) Karin E. Shortreed et al.   PLoS One

A gene for speed: contractile properties of isolated whole EDL muscle from an α-actinin-3 knockout mouse

(2008) S. Chan et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function

(2008) Marcus Krüger et al.   CELL

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Global analysis of cellular protein translation by pulsed SILAC

(2008) Björn Schwanhäusser et al.   PROTEOMICS