Interpretable and accurate prediction models for metagenomics data

Interpretable and accurate prediction models for metagenomics data

(2020) Edi Prifti et al.   GigaScience

Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data

(2019) Sohyun Bang et al.   Scientific Reports

A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction

(2019) Yi-Hui Zhou et al.   Frontiers in Genetics

Artificial intelligence in medicine: current trends and future possibilities

(2018) Varun H Buch et al.   BRITISH JOURNAL OF GENERAL PRACTICE

The growing role of machine learning and artificial intelligence in developmental medicine

(2018) Robert J Reynolds et al.   DEVELOPMENTAL MEDICINE AND CHILD NEUROLOGY

Major microbiota dysbiosis in severe obesity: fate after bariatric surgery

(2018) Judith Aron-Wisnewsky et al.   GUT

Balances: a New Perspective for Microbiome Analysis

(2018) J. Rivera-Pinto et al.   mSystems

Artificial Intelligence in Precision Cardiovascular Medicine

(2017) Chayakrit Krittanawong et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

Quantitative microbiome profiling links gut community variation to microbial load

(2017) Doris Vandeputte et al.   NATURE

Accessible, curated metagenomic data through ExperimentHub

(2017) Edoardo Pasolli et al.   NATURE METHODS

Balance Trees Reveal Microbial Niche Differentiation

(2017) James T. Morton et al.   mSystems

Spectral consensus strategy for accurate reconstruction of large biological networks

(2016) Séverine Affeldt et al.   BMC BIOINFORMATICS

Alterations and correlations of the gut microbiome, metabolism and immunity in patients with primary biliary cirrhosis

(2016) Long-Xian Lv et al.   ENVIRONMENTAL MICROBIOLOGY

Predicting the Future — Big Data, Machine Learning, and Clinical Medicine

(2016) Ziad Obermeyer et al.   NEW ENGLAND JOURNAL OF MEDICINE

The gut microbiome in health and in disease

(2015) Andrew B. Shreiner et al.   CURRENT OPINION IN GASTROENTEROLOGY

Breaking the species barrier for hepatitis delta virus

(2015) Benjamin Y. Winer et al.   HEPATOLOGY

Engineering the gut microbiota to treat hyperammonemia

(2015) Ting-Chin David Shen et al.   JOURNAL OF CLINICAL INVESTIGATION

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2015) Kristoffer Forslund et al.   NATURE

Beneficial modulation of the gut microbiota

(2014) Calum J. Walsh et al.   FEBS LETTERS

Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Altered profile of human gut microbiome is associated with cirrhosis and its complications

(2013) Jasmohan S. Bajaj et al.   JOURNAL OF HEPATOLOGY

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Dietary intervention impact on gut microbial gene richness

(2013) Aurélie Cotillard et al.   NATURE

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Effects of Gut Microbes on Nutrient Absorption and Energy Regulation

(2012) Rosa Krajmalnik-Brown et al.   NUTRITION IN CLINICAL PRACTICE

Performance of classification models from a user perspective

(2011) David Martens et al.   DECISION SUPPORT SYSTEMS

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

Using comparative genome analysis to identify problems in annotated microbial genomes

(2010) M. S. Poptsova et al.   MICROBIOLOGY-SGM

‘Unknown’ proteins and ‘orphan’ enzymes: the missing half of the engineering parts list – and how to find it

(2009) Andrew D. Hanson et al.   BIOCHEMICAL JOURNAL

Innate immunity and intestinal microbiota in the development of Type 1 diabetes

(2008) Li Wen et al.   NATURE