Complete Genome of Lactobacillus iners KY Using Flongle Provides Insight Into the Genetic Background of Optimal Adaption to Vaginal Econiche

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

(2019) João L. Reis-Cunha et al.   PLoS One

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Bacteriophages of the Urinary Microbiome

(2018) Taylor Miller-Ensminger et al.   JOURNAL OF BACTERIOLOGY

Survey on the phage resistance mechanisms displayed by a dairy Lactobacillus helveticus strain

(2017) Miriam Zago et al.   FOOD MICROBIOLOGY

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

RefSeq: an update on prokaryotic genome annotation and curation

(2017) Daniel H Haft et al.   NUCLEIC ACIDS RESEARCH

A complete bacterial genome assembled de novo using only nanopore sequencing data

(2015) Nicholas J Loman et al.   NATURE METHODS

Metagenomic Sequencing Indicates That the Oropharyngeal Phageome of Individuals With Schizophrenia Differs From That of Controls

(2015) Robert H. Yolken et al.   SCHIZOPHRENIA BULLETIN

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

(2015) Welkin H Pope et al.   eLife

Lactobacillus species as biomarkers and agents that can promote various aspects of vaginal health

(2015) Mariya I. Petrova et al.   Frontiers in Physiology

Spontaneously Induced Prophages in Lactobacillus gasseri Contribute to Horizontal Gene Transfer

(2014) J. L. Baugher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Comparative Functional Genomics of Lactobacillus spp. Reveals Possible Mechanisms for Specialization of Vaginal Lactobacilli to Their Environment

(2014) H. Mendes-Soares et al.   JOURNAL OF BACTERIOLOGY

Understanding the enormous diversity of bacteriophages: The tailed phages that infect the bacterial family Enterobacteriaceae

(2014) Julianne H. Grose et al.   VIROLOGY

Characterization of the Genome of the Dairy Lactobacillus helveticus Bacteriophage ΦAQ113

(2013) Miriam Zago et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Type I restriction enzymes and their relatives

(2013) W. A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis

(2013) Jean M Macklaim et al.   Microbiome

Adhesion of Lactobacillus iners AB-1 to Human Fibronectin

(2012) Amy McMillan et al.   Reproductive Sciences

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Sequence analysis of the Lactobacillus temperate phage Sha1

(2011) Bo Hyun Yoon et al.   ARCHIVES OF VIROLOGY

Role of ZnuABC and ZinT in Escherichia coli O157:H7 zinc acquisition and interaction with epithelial cells

(2011) Roberta Gabbianelli et al.   BMC MICROBIOLOGY

Pyrosequencing of the Genital Microbiotas of HIV-Seropositive and -Seronegative Women RevealsLactobacillus inersas the PredominantLactobacillusSpecies

(2010) Gregory T. Spear et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Inerolysin, a Cholesterol-Dependent Cytolysin Produced by Lactobacillus iners

(2010) R. Rampersaud et al.   JOURNAL OF BACTERIOLOGY

Temporal Variability of Human Vaginal Bacteria and Relationship with Bacterial Vaginosis

(2010) Sujatha Srinivasan et al.   PLoS One

Deep Sequencing of the Vaginal Microbiota of Women with HIV

(2010) Ruben Hummelen et al.   PLoS One

At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1

(2010) J. M. Macklaim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cholesterol Exposure at the Membrane Surface Is Necessary and Sufficient to Trigger Perfringolysin O Binding

(2009) John J. Flanagan et al.   BIOCHEMISTRY

Genes and Molecules of Lactobacilli Supporting Probiotic Action

(2008) S. Lebeer et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The CGView Server: a comparative genomics tool for circular genomes

(2008) J. R. Grant et al.   NUCLEIC ACIDS RESEARCH