Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
出版年份 2020 全文链接
标题
Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
作者
关键词
-
出版物
eLife
Volume 9, Issue -, Pages -
出版商
eLife Sciences Publications, Ltd
发表日期
2020-03-30
DOI
10.7554/elife.48714
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Evolutionary Trajectories of IDHWT Glioblastomas Reveal a Common Path of Early Tumorigenesis Instigated Years ahead of Initial Diagnosis
- (2019) Verena Körber et al. CANCER CELL
- Measuring Clonal Evolution in Cancer with Genomics
- (2019) Marc J. Williams et al. Annual Review of Genomics and Human Genetics
- Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data
- (2019) Ketevan Chkhaidze et al. PLoS Computational Biology
- New Insights from Studies of Clonal Hematopoiesis
- (2018) Christopher J. Gibson et al. CLINICAL CANCER RESEARCH
- Mapping the in vivo fitness landscape of lung adenocarcinoma tumor suppression in mice
- (2018) Zoë N. Rogers et al. NATURE GENETICS
- Quantification of subclonal selection in cancer from bulk sequencing data
- (2018) Marc J. Williams et al. NATURE GENETICS
- The effects of mutational processes and selection on driver mutations across cancer types
- (2018) Daniel Temko et al. Nature Communications
- Comprehensive Characterization of Cancer Driver Genes and Mutations
- (2018) Matthew H. Bailey et al. CELL
- OUP accepted manuscript
- (2018) JNCI-Journal of the National Cancer Institute
- Population dynamics of normal human blood inferred from somatic mutations
- (2018) Henry Lee-Six et al. NATURE
- Detecting repeated cancer evolution from multi-region tumor sequencing data
- (2018) Giulio Caravagna et al. NATURE METHODS
- Somatic mutant clones colonize the human esophagus with age
- (2018) Iñigo Martincorena et al. SCIENCE
- brms: An R Package for Bayesian Multilevel Models Using Stan
- (2017) Paul-Christian Bürkner Journal of Statistical Software
- Bayesian inference of negative and positive selection in human cancers
- (2017) Donate Weghorn et al. NATURE GENETICS
- Julia: A Fresh Approach to Numerical Computing
- (2017) Jeff Bezanson et al. SIAM REVIEW
- Mutational Signatures Are Critical for Proper Estimation of Purifying Selection Pressures in Cancer Somatic Mutation Data When Using the dN/dS Metric
- (2017) Jimmy Van den Eynden et al. Frontiers in Genetics
- The Ecology and Evolution of Cancer: The Ultra-Microevolutionary Process
- (2016) Chung-I Wu et al. Annual Review of Genetics
- Universal Asymptotic Clone Size Distribution for General Population Growth
- (2016) Michael D. Nicholson et al. BULLETIN OF MATHEMATICAL BIOLOGY
- Identification of neutral tumor evolution across cancer types
- (2016) Marc J Williams et al. NATURE GENETICS
- Constrained positive selection on cancer mutations in normal skin
- (2016) Iñigo Martincorena et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reply to Martincorena et al.: Evidence for constrained positive selection of cancer mutations in normal skin is lacking
- (2016) Benjamin D. Simons PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC
- (2016) Aki Vehtari et al. STATISTICS AND COMPUTING
- Excess of mutational jackpot events in expanding populations revealed by spatial Luria–Delbrück experiments
- (2016) Diana Fusco et al. Nature Communications
- Quantifying Clonal and Subclonal Passenger Mutations in Cancer Evolution
- (2016) Ivana Bozic et al. PLoS Computational Biology
- A Big Bang model of human colorectal tumor growth
- (2015) Andrea Sottoriva et al. NATURE GENETICS
- Deep sequencing as a probe of normal stem cell fate and preneoplasia in human epidermis
- (2015) Benjamin D. Simons PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution
- (2015) Shaoping Ling et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High burden and pervasive positive selection of somatic mutations in normal human skin
- (2015) I. Martincorena et al. SCIENCE
- Differentiation imbalance in single oesophageal progenitor cells causes clonal immortalization and field change
- (2014) Maria P. Alcolea et al. NATURE CELL BIOLOGY
- Population genetics of neutral mutations in exponentially growing cancer cell populations
- (2013) Rick Durrett ANNALS OF APPLIED PROBABILITY
- Why Time Matters: Codon Evolution and the Temporal Dynamics of dN/dS
- (2013) Carina F. Mugal et al. MOLECULAR BIOLOGY AND EVOLUTION
- Mutational heterogeneity in cancer and the search for new cancer-associated genes
- (2013) Michael S. Lawrence et al. NATURE
- Defining Stem Cell Dynamics in Models of Intestinal Tumor Initiation
- (2013) L. Vermeulen et al. SCIENCE
- Stochastic homeostasis in human airway epithelium is achieved by neutral competition of basal cell progenitors
- (2013) Vitor H Teixeira et al. eLife
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- A Single Progenitor Population Switches Behavior to Maintain and Repair Esophageal Epithelium
- (2012) D. P. Doupe et al. SCIENCE
- Universal patterns of stem cell fate in cycling adult tissues
- (2011) A. M. Klein et al. DEVELOPMENT
- Spatial structure increases the waiting time for cancer
- (2011) Erik A Martens et al. NEW JOURNAL OF PHYSICS
- Intestinal Stem Cell Replacement Follows a Pattern of Neutral Drift
- (2010) C. Lopez-Garcia et al. SCIENCE
- Stochastic fate of p53-mutant epidermal progenitor cells is tilted toward proliferation by UV B during preneoplasia
- (2009) A. M. Klein et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Population Genetics of dN/dS
- (2008) Sergey Kryazhimskiy et al. PLoS Genetics
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started