标题
Dynamics of the 4D genome during in vivo lineage specification and differentiation
作者
关键词
-
出版物
Nature Communications
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-06-01
DOI
10.1038/s41467-020-16598-7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A Dynamic Folded Hairpin Conformation Is Associated with α-Globin Activation in Erythroid Cells
- (2020) Andrea M. Chiariello et al. Cell Reports
- Transcription factors and 3D genome conformation in cell-fate decisions
- (2019) Ralph Stadhouders et al. NATURE
- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data
- (2019) Samuel L. Wolock et al. Cell Systems
- Preformed chromatin topology assists transcriptional robustness of Shh during limb development
- (2019) Christina Paliou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A revised model for promoter competition based on multi-way chromatin interactions at the α-globin locus
- (2019) A. Marieke Oudelaar et al. Nature Communications
- Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
- (2018) Ralph Stadhouders et al. NATURE GENETICS
- Population snapshots predict early haematopoietic and erythroid hierarchies
- (2018) Betsabeh Khoramian Tusi et al. NATURE
- Dynamic interplay between enhancer–promoter topology and gene activity
- (2018) Hongtao Chen et al. NATURE GENETICS
- A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions
- (2018) Jill M. Brown et al. Nature Communications
- Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
- (2018) A. Marieke Oudelaar et al. NATURE GENETICS
- HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
- (2017) Tao Yang et al. GENOME RESEARCH
- Between form and function: the complexity of genome folding
- (2017) A. Marieke Oudelaar et al. HUMAN MOLECULAR GENETICS
- Tissue-specific CTCF–cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo
- (2017) Lars L. P. Hanssen et al. NATURE CELL BIOLOGY
- Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
- (2017) Adam J Rubin et al. NATURE GENETICS
- Simultaneous epitope and transcriptome measurement in single cells
- (2017) Marlon Stoeckius et al. NATURE METHODS
- Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C
- (2017) A. Marieke Oudelaar et al. NUCLEIC ACIDS RESEARCH
- Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
- (2017) Paula Freire-Pritchett et al. eLife
- TADtool: visual parameter identification for TAD-calling algorithms
- (2016) Kai Kruse et al. BIOINFORMATICS
- Shhand ZRS enhancer colocalisation is specific to the zone of polarising activity
- (2016) Iain Williamson et al. DEVELOPMENT
- Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
- (2016) Guillaume Andrey et al. GENOME RESEARCH
- Genetic dissection of the α-globin super-enhancer in vivo
- (2016) Deborah Hay et al. NATURE GENETICS
- Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions
- (2015) Eric M. Pietras et al. Cell Stem Cell
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
- (2014) Nicola H. Dryden et al. GENOME RESEARCH
- Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
- (2014) Jim R Hughes et al. NATURE GENETICS
- Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements
- (2014) Petros Kolovos et al. Epigenetics & Chromatin
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Topology of mammalian developmental enhancers and their regulatory landscapes
- (2013) Wouter de Laat et al. NATURE
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- A Regulatory Archipelago Controls Hox Genes Transcription in Digits
- (2011) Thomas Montavon et al. CELL
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- A CTCF-independent role for cohesin in tissue-specific transcription
- (2010) D. Schmidt et al. GENOME RESEARCH
- Mediator and cohesin connect gene expression and chromatin architecture
- (2010) Michael H. Kagey et al. NATURE
- A Key Commitment Step in Erythropoiesis Is Synchronized with the Cell Cycle Clock through Mutual Inhibition between PU.1 and S-Phase Progression
- (2010) Ramona Pop et al. PLOS BIOLOGY
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started