Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat

A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat

(2019) Zhenqi Su et al.   NATURE GENETICS

Mutation of a histidine-rich calcium-binding-protein gene in wheat confers resistance to Fusarium head blight

(2019) Guoqiang Li et al.   NATURE GENETICS

A new player contributing to durable Fusarium resistance

(2019) Evans S. Lagudah et al.   NATURE GENETICS

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Fusarium Head Blight in Durum Wheat: Recent Status, Breeding Directions, and Future Research Prospects

(2019) Jemanesh K. Haile et al.   PHYTOPATHOLOGY

An efficient and reproducible Agrobacterium-mediated transformation method for hexaploid wheat (Triticum aestivum L.)

(2019) Sadiye Hayta et al.   Plant Methods

Application of virus-induced gene silencing for identification of FHB resistant genes

(2019) Yan-hui FAN et al.   Journal of Integrative Agriculture

Harnessing Wheat Fhb1 for Fusarium Resistance

(2019) Yuanfeng Hao et al.   TRENDS IN PLANT SCIENCE

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cloning and characterization of a specific UDP-glycosyltransferase gene induced by DON and Fusarium graminearum

(2018) Lanfei Zhao et al.   PLANT CELL REPORTS

Development of Perennial Wheat Through Hybridization Between Wheat and Wheatgrasses: A Review

(2018) Lei Cui et al.   Engineering

Genome sequence of the progenitor of wheat A subgenome Triticum urartu

(2018) Hong-Qing Ling et al.   NATURE

Assessing genome assembly quality using the LTR Assembly Index (LAI)

(2018) Shujun Ou et al.   NUCLEIC ACIDS RESEARCH

Shifting the limits in wheat research and breeding using a fully annotated reference genome

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The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improved maize reference genome with single-molecule technologies

(2017) Yinping Jiao et al.   NATURE

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Functional horizontal gene transfer from bacteria to eukaryotes

(2017) Filip Husnik et al.   NATURE REVIEWS MICROBIOLOGY

LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

(2017) Shujun Ou et al.   PLANT PHYSIOLOGY

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

Cytogenetic mapping of a major locus for resistance to Fusarium head blight and crown rot of wheat on Thinopyrum elongatum 7EL and its pyramiding with valuable genes from a Th. ponticum homoeologous arm onto bread wheat 7DL

(2017) Carla Ceoloni et al.   THEORETICAL AND APPLIED GENETICS

Wheat Ms2 encodes for an orphan protein that confers male sterility in grass species

(2017) Fei Ni et al.   Nature Communications

Shaping the evolutionary tree of green plants: evidence from the GST family

(2017) Francesco Monticolo et al.   Scientific Reports

Horizontal transfer of a ß-1,6-glucanase gene from an ancestral species of fungal endophyte to a cool-season grass host

(2017) Hiroshi Shinozuka et al.   Scientific Reports

RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

(2016) Pingchuan Li et al.   BMC GENOMICS

Characterization of Deoxynivalenol–Glutathione Conjugates Using Nuclear Magnetic Resonance Spectroscopy and Liquid Chromatography–High-Resolution Mass Spectrometry

(2016) Ana Stanic et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Wheat Fhb1 encodes a chimeric lectin with agglutinin domains and a pore-forming toxin-like domain conferring resistance to Fusarium head blight

(2016) Nidhi Rawat et al.   NATURE GENETICS

Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing

(2016) Traci Kantarski et al.   THEORETICAL AND APPLIED GENETICS

Molecular and Cytological Comparisons of Chromosomes 7el1, 7el2, 7Ee, and 7Ei Derived from Thinopyrum

(2015) Jun Guo et al.   CYTOGENETIC AND GENOME RESEARCH

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

The genome of cultivated sweet potato containsAgrobacteriumT-DNAs with expressed genes: An example of a naturally transgenic food crop

(2015) Tina Kyndt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-density mapping of the major FHB resistance gene Fhb7 derived from Thinopyrum ponticum and its pyramiding with Fhb1 by marker-assisted selection

(2015) Jun Guo et al.   THEORETICAL AND APPLIED GENETICS

Biological detoxification of mycotoxins: a review

(2014) Amal S. Hathout et al.   ANNALS OF MICROBIOLOGY

Oligonucleotides replacing the roles of repetitive sequences pAs1, pSc119.2, pTa-535, pTa71, CCS1, and pAWRC.1 for FISH analysis

(2014) Zongxiang Tang et al.   JOURNAL OF APPLIED GENETICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Stable isotopic labelling-assisted untargeted metabolic profiling reveals novel conjugates of the mycotoxin deoxynivalenol in wheat

(2012) Bernhard Kluger et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Fungal endophytes of grasses

(2012) Aiko Tanaka et al.   CURRENT OPINION IN PLANT BIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure

(2012) Baochun Li et al.   PLANT JOURNAL

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange

(2011) Xue Shi et al.   Plant Methods

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Transcriptome Analysis of the Barley–Deoxynivalenol Interaction: Evidence for a Role of Glutathione in Deoxynivalenol Detoxification

(2010) Stephanie A. Gardiner et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

A genetic map of Lophopyrum ponticum chromosome 7E, harboring resistance genes to Fusarium head blight and leaf rust

(2010) Xiuli Zhang et al.   THEORETICAL AND APPLIED GENETICS

The fungal glutathione S-transferase system. Evidence of new classes in the wood-degrading basidiomycete Phanerochaete chrysosporium

(2009) Mélanie Morel et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Occurrence of deoxynivalenol and its 3-β-D-glucoside in wheat and maize

(2009) F. Berthiller et al.   Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment

Thinopyrum ponticum and Th. intermedium: the promising source of resistance to fungal and viral diseases of wheat

(2009) Hongjie Li et al.   Journal of Genetics and Genomics

Action and reaction of host and pathogen during Fusarium head blight disease

(2009) Stephanie Walter et al.   NEW PHYTOLOGIST

For Blighted Waves of Grain: Fusarium graminearum in the Postgenomics Era

(2009) F. Trail   PLANT PHYSIOLOGY

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Molecular cytogenetic characterization of alien introgressions with gene Fhb3 for resistance to Fusarium head blight disease of wheat

(2008) L. L. Qi et al.   THEORETICAL AND APPLIED GENETICS

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY