A transcriptional regulatory network of Rsv3-mediated extreme resistance against Soybean mosaic virus

GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis

(2018) Michitaro Shibata et al.   DEVELOPMENT

Soybean mosaic virus : a successful potyvirus with a wide distribution but restricted natural host range

(2018) M. R. Hajimorad et al.   MOLECULAR PLANT PATHOLOGY

A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration

(2018) Momoko Ikeuchi et al.   PLANT AND CELL PHYSIOLOGY

Isolation and validation of a candidate Rsv3 gene from a soybean genotype that confers strain-specific resistance to soybean mosaic virus

(2018) Phu-Tri Tran et al.   VIROLOGY

Elements Involved in the Rsv3-Mediated Extreme Resistance against an Avirulent Strain of Soybean Mosaic Virus

(2018) Mazen Alazem et al.   Viruses-Basel

Computational prediction of gene regulatory networks in plant growth and development

(2018) Samiul Haque et al.   CURRENT OPINION IN PLANT BIOLOGY

MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato

(2017) Minmin Du et al.   PLANT CELL

Inference of Transcription Regulatory Network in Low Phytic Acid Soybean Seeds

(2017) Neelam Redekar et al.   Frontiers in Plant Science

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Identification of single nucleotide polymorphisms in soybean associated with resistance to common cutworm (Spodoptera litura Fabricius)

(2016) Hailun Liu et al.   EUPHYTICA

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Candidate Gene Sequence Analyses toward Identifying -Type Resistance to

(2016) N. R. Redekar et al.   Plant Genome

Arabidopsis Lectin Receptor Kinases LecRK-IX.1 and LecRK-IX.2 Are Functional Analogs in Regulating Phytophthora Resistance and Plant Cell Death

(2015) Yan Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Gene Networks in Plant Biology: Approaches in Reconstruction and Analysis

(2015) Yupeng Li et al.   TRENDS IN PLANT SCIENCE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ARACNe-based inference, using curated microarray data, of Arabidopsis thaliana root transcriptional regulatory networks

(2014) Ricardo A Chávez Montes et al.   BMC PLANT BIOLOGY

Roles of plant hormones in the regulation of host-virus interactions

(2014) Mazen Alazem et al.   MOLECULAR PLANT PATHOLOGY

An Arabidopsis gene regulatory network for secondary cell wall synthesis

(2014) M. Taylor-Teeples et al.   NATURE

Type 2C Protein Phosphatase Is a Key Regulator of Antiviral Extreme Resistance Limiting Virus Spread

(2014) Jang-Kyun Seo et al.   Scientific Reports

Intracellular coordination of potyviral RNA functions in infection

(2014) Kristiina Mäkinen et al.   Frontiers in Plant Science

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Transcriptional Regulation and Its Misregulation in Disease

(2013) Tong Ihn Lee et al.   CELL

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

Arabidopsis Basic Helix-Loop-Helix Transcription Factors MYC2, MYC3, and MYC4 Regulate Glucosinolate Biosynthesis, Insect Performance, and Feeding Behavior

(2013) F. Schweizer et al.   PLANT CELL

6K2-induced vesicles can move cell to cell during turnip mosaic virus infection

(2013) Romain Grangeon et al.   Frontiers in Microbiology

Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants

(2013) Mohammed Nuruzzaman et al.   Frontiers in Microbiology

Inferring gene regulatory networks by ANOVA

(2012) Robert Küffner et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

TIGRESS: Trustful Inference of Gene REgulation using Stability Selection

(2012) Anne-Claire Haury et al.   BMC Systems Biology

MYC2: The Master in Action

(2012) Kemal Kazan et al.   Molecular Plant

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

ERF5 and ERF6 Play Redundant Roles as Positive Regulators of JA/Et-Mediated Defense against Botrytis cinerea in Arabidopsis

(2012) Caroline S. Moffat et al.   PLoS One

NAC proteins: regulation and role in stress tolerance

(2012) Swati Puranik et al.   TRENDS IN PLANT SCIENCE

Host endomembrane recruitment for plant RNA virus replication

(2012) Romain Grangeon et al.   Current Opinion in Virology

Two-Component Elements Mediate Interactions between Cytokinin and Salicylic Acid in Plant Immunity

(2012) Cristiana T. Argueso et al.   PLoS Genetics

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

RNA-Seq Analysis of a Soybean Near-Isogenic Line Carrying Bacterial Leaf Pustule-Resistant and -Susceptible Alleles

(2011) K. H. Kim et al.   DNA RESEARCH

The Rsv3 Locus Conferring Resistance to Soybean Mosaic Virus is Associated with a Cluster of Coiled-Coil Nucleotide-Binding Leucine-Rich Repeat Genes

(2011) Su Jeoung Suh et al.   Plant Genome

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis

(2010) Christoph Kaleta et al.   BMC Systems Biology

Silencing Genes Encoding Omega-3 Fatty Acid Desaturase Alters Seed Size and Accumulation ofBean pod mottle virusin Soybean

(2010) Ajay Kumar Singh et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Fine Mapping and Candidate Gene Discovery of the Soybean Mosaic Virus Resistance Gene, Rsv4

(2010) M. A. Saghai Maroof et al.   Plant Genome

Strain-Specific Cylindrical Inclusion Protein ofSoybean mosaic virusElicits Extreme Resistance and a Lethal Systemic Hypersensitive Response in Two Resistant Soybean Cultivars

(2009) Jang-Kyun Seo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Activation of the Salicylic Acid Signaling Pathway EnhancesClover yellow vein virusVirulence in Susceptible Pea Cultivars

(2009) Go Atsumi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

A Small Subfamily ofArabidopsis RADIALIS-LIKE SANT/MYBGenes: A Link to HOOKLESS1-Mediated Signal Transduction during Early Morphogenesis

(2008) Aya HAMAGUCHI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Gene regulatory network inference: Data integration in dynamic models—A review

(2008) Michael Hecker et al.   BIOSYSTEMS

minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information

(2008) Patrick E Meyer et al.   BMC BIOINFORMATICS