标题
Sequence count data are poorly fit by the negative binomial distribution
作者
关键词
Statistical distributions, Test statistics, Microbiome, Research errors, RNA sequencing, Simulation and modeling, Polynomials, Statistical data
出版物
PLoS One
Volume 15, Issue 4, Pages e0224909
出版商
Public Library of Science (PLoS)
发表日期
2020-05-01
DOI
10.1371/journal.pone.0224909
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population-specific feeding rates by invasive dreissenid mussels
- (2017) Ruben Props et al. ENVIRONMENTAL MICROBIOLOGY
- Towards a bacterial treatment for armpit malodour
- (2017) Chris Callewaert et al. EXPERIMENTAL DERMATOLOGY
- Quantitative microbiome profiling links gut community variation to microbial load
- (2017) Doris Vandeputte et al. NATURE
- NBLDA: negative binomial linear discriminant analysis for RNA-Seq data
- (2016) Kai Dong et al. BMC BIOINFORMATICS
- Absolute quantification of microbial taxon abundances
- (2016) Ruben Props et al. ISME Journal
- Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment
- (2015) Marek Gierliński et al. BIOINFORMATICS
- SimSeq: a nonparametric approach to simulation of RNA-sequence datasets
- (2015) Sam Benidt et al. BIOINFORMATICS
- Single-gene negative binomial regression models for RNA-Seq data with higher-order asymptotic inference
- (2015) Yanming Di Statistics and Its Interface
- Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
- (2015) Wenqian Zhang et al. GENOME BIOLOGY
- Assessment and Selection of Competing Models for Zero-Inflated Microbiome Data
- (2015) Lizhen Xu et al. PLoS One
- Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
- (2014) Paul J. McMurdie et al. PLoS Computational Biology
- Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
- (2014) Andrew D Fernandes et al. Microbiome
- The Genotype-Tissue Expression (GTEx) project
- (2013) John Lonsdale et al. NATURE GENETICS
- Seasonal restructuring of the ground squirrel gut microbiota over the annual hibernation cycle
- (2012) Hannah V. Carey et al. AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY
- Bayesian analysis of RNA sequencing data by estimating multiple shrinkage priors
- (2012) M. A. Van De Wiel et al. BIOSTATISTICS
- Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
- (2011) A. D. Kostic et al. GENOME RESEARCH
- Forensic identification using skin bacterial communities
- (2010) N. Fierer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- The NIH Human Microbiome Project
- (2009) et al. GENOME RESEARCH
- The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
- (2009) P. J. Turnbaugh et al. Science Translational Medicine
- A unified approach to false discovery rate estimation
- (2008) Korbinian Strimmer BMC BIOINFORMATICS
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