Heat stress response in the closest algal relatives of land plants reveals conserved stress signaling circuits

Evo-physio: on stress responses and the earliest land plants

(2020) Janine M R Fürst-Jansen et al.   JOURNAL OF EXPERIMENTAL BOTANY

An Ancient COI1-Independent Function for Reactive Electrophilic Oxylipins in Thermotolerance

(2020) Isabel Monte et al.   CURRENT BIOLOGY

PILS6 is a temperature-sensitive regulator of nuclear auxin input and organ growth in Arabidopsis thaliana

(2019) Elena Feraru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land

(2019) Chenchen Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Homogalacturonan Accumulation in Cell Walls of the Green Alga Zygnema sp. (Charophyta) Increases Desiccation Resistance

(2019) Klaus Herburger et al.   Frontiers in Plant Science

Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic)

(2019) Martin Rippin et al.   ENVIRONMENTAL MICROBIOLOGY

Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution

(2019) Shifeng Cheng et al.   CELL

One thousand plant transcriptomes and the phylogenomics of green plants

(2019)   NATURE

A ligand-independent origin of abscisic acid perception

(2019) Yufei Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

(2018) Tomoaki Nishiyama et al.   CELL

The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte

(2018) Mark N. Puttick et al.   CURRENT BIOLOGY

Great moments in evolution: the conquest of land by plants

(2018) Stefan A Rensing   CURRENT OPINION IN PLANT BIOLOGY

Cytokinin signaling in plant development

(2018) Joseph J. Kieber et al.   DEVELOPMENT

Advances and current challenges in calcium signaling

(2018) Jörg Kudla et al.   NEW PHYTOLOGIST

Plant evolution: landmarks on the path to terrestrial life

(2018) Jan de Vries et al.   NEW PHYTOLOGIST

HOP family plays a major role in long-term acquired thermotolerance in Arabidopsis

(2018) Nuria Fernández-Bautista et al.   PLANT CELL AND ENVIRONMENT

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution

(2018) Daniel Lang et al.   PLANT JOURNAL

Control of Retrograde Signaling by Rapid Turnover of GENOMES UNCOUPLED1

(2018) Guo-Zhang Wu et al.   PLANT PHYSIOLOGY

Embryophyte stress signaling evolved in the algal progenitors of land plants

(2018) Jan de Vries et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The timescale of early land plant evolution

(2018) Jennifer L. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origin and evolution of the nuclear auxin response system

(2018) Sumanth K Mutte et al.   eLife

Genome uncoupled 1 mutants are hypersensitive to norflurazon and lincomycin

(2018) Xiaobo Zhao et al.   PLANT PHYSIOLOGY

The genomes uncoupled mutants are more sensitive to norflurazon than wild type

(2018) Lijuan Song et al.   PLANT PHYSIOLOGY

An Evolutionarily Conserved Abscisic Acid Signaling Pathway Regulates Dormancy in the Liverwort Marchantia polymorpha

(2018) D. Magnus Eklund et al.   CURRENT BIOLOGY

Increases in Absolute Temperature Stimulate Free Calcium Concentration Elevations in the Chloroplast

(2018) Gioia Lenzoni et al.   PLANT AND CELL PHYSIOLOGY

Plastid-to-Nucleus Retrograde Signalling during Chloroplast Biogenesis Does Not Require ABI4

(2018) Sylwia M. Kacprzak et al.   PLANT PHYSIOLOGY

Genome-wide RNA structurome reprogramming by acute heat shock globally regulates mRNA abundance

(2018) Zhao Su et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Something ancient and something neofunctionalized—evolution of land plant hormone signaling pathways

(2018) John L Bowman et al.   CURRENT OPINION IN PLANT BIOLOGY

The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

(2017) Lindsay K. Pino et al.   MASS SPECTROMETRY REVIEWS

A robust, single-injection method for targeted, broad-spectrum plasma metabolomics

(2017) Kefeng Li et al.   Metabolomics

The plant perceptron connects environment to development

(2017) Ben Scheres et al.   NATURE

Enhanced Desiccation Tolerance in Mature Cultures of the Streptophytic Green Alga Zygnema circumcarinatum Revealed by Transcriptomics

(2017) Martin Rippin et al.   PLANT AND CELL PHYSIOLOGY

How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae?

(2017) Jan de Vries et al.   PLANT AND CELL PHYSIOLOGY

Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens

(2017) Kinuka Ohtaka et al.   PLANT PHYSIOLOGY

Seedlings Lacking the PTM Protein Do Not Show a genomes uncoupled (gun) Mutant Phenotype

(2017) Mike T. Page et al.   PLANT PHYSIOLOGY

Retrograde Signals Navigate the Path to Chloroplast Development

(2017) Tamara Hernández-Verdeja et al.   PLANT PHYSIOLOGY

Transcriptional Regulatory Network of Plant Heat Stress Response

(2017) Naohiko Ohama et al.   TRENDS IN PLANT SCIENCE

Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond

(2016) Kai Xun Chan et al.   Annual Review of Plant Biology

Retrograde signaling: Organelles go networking

(2016) Tatjana Kleine et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

Integration of calcium and ABA signaling

(2016) Kai H Edel et al.   CURRENT OPINION IN PLANT BIOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

An Ancient Bacterial Signaling Pathway Regulates Chloroplast Function to Influence Growth and Development in Arabidopsis

(2016) Matteo Sugliani et al.   PLANT CELL

Wheat leaf lipids during heat stress: I. High day and night temperatures result in major lipid alterations

(2016) Sruthi Narayanan et al.   PLANT CELL AND ENVIRONMENT

The calcium-dependent protein kinase gene VaCPK29 is involved in grapevine responses to heat and osmotic stresses

(2016) Alexandra S. Dubrovina et al.   PLANT GROWTH REGULATION

Streptophyte Terrestrialization in Light of Plastid Evolution

(2016) Jan de Vries et al.   TRENDS IN PLANT SCIENCE

Why Plants Were Terrestrial from the Beginning

(2016) Jesper Harholt et al.   TRENDS IN PLANT SCIENCE

Synthesis and Function of Apocarotenoid Signals in Plants

(2016) Xin Hou et al.   TRENDS IN PLANT SCIENCE

Chloroplast Retrograde Regulation of Heat Stress Responses in Plants

(2016) Ai-Zhen Sun et al.   Frontiers in Plant Science

Metabolic pathways regulated by γ-aminobutyric acid (GABA) contributing to heat tolerance in creeping bentgrass (Agrostis stolonifera)

(2016) Zhou Li et al.   Scientific Reports

Strigolactones, a Novel Carotenoid-Derived Plant Hormone

(2015) Salim Al-Babili et al.   Annual Review of Plant Biology

Increasing complexity and versatility: How the calcium signaling toolkit was shaped during plant land colonization

(2015) Kai H. Edel et al.   CELL CALCIUM

The Evolutionary Origin of a Terrestrial Flora

(2015) Charles Francis Delwiche et al.   CURRENT BIOLOGY

Stomatal Guard Cells Co-opted an Ancient ABA-Dependent Desiccation Survival System to Regulate Stomatal Closure

(2015) Christof Lind et al.   CURRENT BIOLOGY

The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome

(2015) Tanya Z. Berardini et al.   GENESIS

Amino Acid Catabolism in Plants

(2015) Tatjana M. Hildebrandt et al.   Molecular Plant

Aquaporins in Plants

(2015) Christophe Maurel et al.   PHYSIOLOGICAL REVIEWS

TheChlamydomonasheat stress response

(2015) Michael Schroda et al.   PLANT JOURNAL

Phytochrome diversity in green plants and the origin of canonical plant phytochromes

(2015) Fay-Wei Li et al.   Nature Communications

GABA signalling modulates plant growth by directly regulating the activity of plant-specific anion transporters

(2015) Sunita A. Ramesh et al.   Nature Communications

Summarizing and exploring data of a decade of cytokinin-related transcriptomics

(2015) Wolfram G. Brenner et al.   Frontiers in Plant Science

Conservation of ethylene as a plant hormone over 450 million years of evolution

(2015) Chuanli Ju et al.   Nature Plants

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

(2014) Brad R Ruhfel et al.   BMC EVOLUTIONARY BIOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

An Uncharacterized Apocarotenoid-Derived Signal Generated in  -Carotene Desaturase Mutants Regulates Leaf Development and the Expression of Chloroplast and Nuclear Genes in Arabidopsis

(2014) A.-O. Avendano-Vazquez et al.   PLANT CELL

Systems-Wide Analysis of Acclimation Responses to Long-Term Heat Stress and Recovery in the Photosynthetic Model OrganismChlamydomonas reinhardtii

(2014) Dorothea Hemme et al.   PLANT CELL

Analysis of an Arabidopsis heat-sensitive mutant reveals that chlorophyll synthase is involved in reutilization of chlorophyllide during chlorophyll turnover

(2014) Yao-Pin Lin et al.   PLANT JOURNAL

Hydrogen Peroxide Acts Upstream of Nitric Oxide in the Heat Shock Pathway in Arabidopsis Seedlings

(2014) L. Wang et al.   PLANT PHYSIOLOGY

Oxidative Stress Contributes to Autophagy Induction in Response to Endoplasmic Reticulum Stress in Chlamydomonas reinhardtii

(2014) M. Perez-Martin et al.   PLANT PHYSIOLOGY

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation

(2014) Koichi Hori et al.   Nature Communications

Functional Analysis of Light-harvesting-like Protein 3 (LIL3) and Its Light-harvesting Chlorophyll-binding Motif inArabidopsis

(2013) Kaori Takahashi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Green Targeting Predictor and Ambiguous Targeting Predictor 2: the pitfalls of plant protein targeting prediction and of transient protein expression in heterologous systems

(2013) Janina Fuss et al.   NEW PHYTOLOGIST

AtFKBP16-1, a chloroplast lumenal immunophilin, mediates response to photosynthetic stress by regulating PsaL stability

(2013) Min Sook Seok et al.   PHYSIOLOGIA PLANTARUM

Evolution of photoprotection mechanisms upon land colonization: evidence of PSBS-dependent NPQ in late Streptophyte algae

(2013) Caterina Gerotto et al.   PHYSIOLOGIA PLANTARUM

A novel membrane-bound E3 ubiquitin ligase enhances the thermal resistance in plants

(2013) Zhi-Bin Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

BLH1 and KNAT3 modulate ABA responses during germination and early seedling development in Arabidopsis

(2013) Dachan Kim et al.   PLANT JOURNAL

The Arabidopsis RING E3 Ubiquitin Ligase AtAIRP3/LOG2 Participates in Positive Regulation of High-Salt and Drought Stress Responses

(2013) J. H. Kim et al.   PLANT PHYSIOLOGY

Calcium-Dependent Protein Kinases: Hubs in Plant Stress Signaling and Development

(2013) P. Schulz et al.   PLANT PHYSIOLOGY

Desiccation stress and tolerance in green algae: consequences for ultrastructure, physiological and molecular mechanisms

(2013) Andreas Holzinger et al.   Frontiers in Plant Science

Retrograde Signaling by the Plastidial Metabolite MEcPP Regulates Expression of Nuclear Stress-Response Genes

(2012) Yanmei Xiao et al.   CELL

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

A positive/negative ion–switching, targeted mass spectrometry–based metabolomics platform for bodily fluids, cells, and fresh and fixed tissue

(2012) Min Yuan et al.   Nature Protocols

Arabidopsis histidine kinase 5 regulates salt sensitivity and resistance against bacterial and fungal infection

(2012) Jasmine Pham et al.   NEW PHYTOLOGIST

Plasma Membrane Cyclic Nucleotide Gated Calcium Channels Control Land Plant Thermal Sensing and Acquired Thermotolerance

(2012) A. Finka et al.   PLANT CELL

Direct interactions of ABA-insensitive(ABI)-clade protein phosphatase(PP)2Cs with calcium-dependent protein kinases and ABA response element-binding bZIPs may contribute to turning off ABA response

(2012) Tim Lynch et al.   PLANT MOLECULAR BIOLOGY

Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants

(2012) F. Ramel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

The role of the xanthophyll cycle and of lutein in photoprotection of photosystem II

(2011) Peter Jahns et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Origin of land plants: Do conjugating green algae hold the key?

(2011) Sabina Wodniok et al.   BMC EVOLUTIONARY BIOLOGY

Evolution of Abscisic Acid Synthesis and Signaling Mechanisms

(2011) Felix Hauser et al.   CURRENT BIOLOGY

The chloroplast proteome: a survey from the Chlamydomonas reinhardtii perspective with a focus on distinctive features

(2011) Mia Terashima et al.   CURRENT GENETICS

Plant organellar calcium signalling: an emerging field

(2011) Simon Stael et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling inArabidopsis

(2011) Gonzalo M. Estavillo et al.   PLANT CELL

Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

(2011) Anireddy S.N. Reddy et al.   PLANT CELL

Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis

(2011) Y. Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Mimicry Regulates ABA Signaling by SnRK2 Kinases and PP2C Phosphatases

(2011) F.-F. Soon et al.   SCIENCE

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

(2011) J. A. Banks et al.   SCIENCE

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants

(2010) Pinja Jaspers et al.   BMC GENOMICS

A Subset of Cytokinin Two-component Signaling System Plays a Role in Cold Temperature Stress Response inArabidopsis

(2010) Jin Jeon et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MOLECULAR PHYLOGENY AND REVISION OF THE GENUSNETRIUM(ZYGNEMATOPHYCEAE, STREPTOPHYTA):NUCLEOTAENIUMGEN. NOV.

(2010) Andrey A. Gontcharov et al.   JOURNAL OF PHYCOLOGY

AT_CHLORO, a Comprehensive Chloroplast Proteome Database with Subplastidial Localization and Curated Information on Envelope Proteins

(2010) Myriam Ferro et al.   MOLECULAR & CELLULAR PROTEOMICS

Molecular Basis of the Core Regulatory Network in ABA Responses: Sensing, Signaling and Transport

(2010) T. Umezawa et al.   PLANT AND CELL PHYSIOLOGY

The PsbW protein stabilizes the supramolecular organization of photosystem II in higher plants

(2010) José G. García-Cerdán et al.   PLANT JOURNAL

The Metabolic and Developmental Roles of Carotenoid Cleavage Dioxygenase4 from Potato

(2010) R. Campbell et al.   PLANT PHYSIOLOGY

LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis

(2010) R. Tanaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Streptophyte algae and the origin of embryophytes

(2009) Burkhard Becker et al.   ANNALS OF BOTANY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

The Heat Shock Response in Moss Plants Is Regulated by Specific Calcium-Permeable Channels in the Plasma Membrane

(2009) Y. Saidi et al.   PLANT CELL

Protein Phosphatases 2C Regulate the Activation of the Snf1-Related Kinase OST1 by Abscisic Acid in Arabidopsis

(2009) F. Vlad et al.   PLANT CELL

Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs

(2009) David Meiri et al.   PLANT JOURNAL

PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis

(2009) Noriyuki Nishimura et al.   PLANT JOURNAL

A Phosphofructokinase B-Type Carbohydrate Kinase Family Protein, NARA5, for Massive Expressions of Plastid-Encoded Photosynthetic Genes in Arabidopsis

(2009) T. Ogawa et al.   PLANT PHYSIOLOGY

Triple Loss of Function of Protein Phosphatases Type 2C Leads to Partial Constitutive Response to Endogenous Abscisic Acid

(2009) S. Rubio et al.   PLANT PHYSIOLOGY

Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis

(2009) T. Umezawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Dynamics of Photosynthesis

(2008) Stephan Eberhard et al.   Annual Review of Genetics

Retrograde signaling and plant stress: plastid signals initiate cellular stress responses

(2008) Aurora Piñas Fernández et al.   CURRENT OPINION IN PLANT BIOLOGY

The Carotenoid Cleavage Dioxygenase 1 Enzyme Has Broad Substrate Specificity, Cleaving Multiple Carotenoids at Two Different Bond Positions

(2008) Jonathan T. Vogel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cytosolic and Plastoglobule-targeted Carotenoid Dioxygenases fromCrocus sativusAre Both Involved in β-Ionone Release

(2008) Angela Rubio et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Photo-oxidative Stress Impacts the Expression of Genes Encoding Iron Metabolism Components in Chlamydomonas†

(2008) Joanne C. Long et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Arabidopsis TONNEAU1 Proteins Are Essential for Preprophase Band Formation and Interact with Centrin

(2008) J. Azimzadeh et al.   PLANT CELL

The calmodulin-binding protein kinase 3 is part of heat-shock signal transduction inArabidopsis thaliana

(2008) Hong-Tao Liu et al.   PLANT JOURNAL

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE