Multi-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes
出版年份 2020 全文链接
标题
Multi-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes
作者
关键词
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出版物
NUCLEIC ACIDS RESEARCH
Volume 48, Issue 8, Pages 4115-4138
出版商
Oxford University Press (OUP)
发表日期
2020-03-08
DOI
10.1093/nar/gkaa163
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- NEAT1 regulates neuroglial cell mediating Aβ clearance via the epigenetic regulation of endocytosis-related genes expression
- (2019) Ziqiang Wang et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Molecular basis for hierarchical histone de-β-hydroxybutyrylation by SIRT3
- (2019) Xingrun Zhang et al. Cell Discovery
- Distinct H3K9me3 and DNA methylation modifications during mouse spermatogenesis
- (2019) Yingdong Liu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Metabolic regulation of gene expression by histone lactylation
- (2019) Di Zhang et al. NATURE
- The transcription factor SOX30 is a key regulator of mouse spermiogenesis
- (2018) Daoqin Zhang et al. DEVELOPMENT
- Sox30 initiates transcription of haploid genes during late meiosis and spermiogenesis in mouse testes
- (2018) Shun Bai et al. DEVELOPMENT
- HIV latency is reversed by ACSS2-driven histone crotonylation
- (2018) Guochun Jiang et al. JOURNAL OF CLINICAL INVESTIGATION
- Intracellular Crotonyl-CoA Stimulates Transcription through p300-Catalyzed Histone Crotonylation
- (2018) Benjamin R. Sabari et al. MOLECULAR CELL
- p300-Mediated Lysine 2-Hydroxyisobutyrylation Regulates Glycolysis
- (2018) He Huang et al. MOLECULAR CELL
- Identification of the YEATS domain of GAS41 as a pH-dependent reader of histone succinylation
- (2018) Yi Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spatiotemporal Control of Acetyl-CoA Metabolism in Chromatin Regulation
- (2018) Sharanya Sivanand et al. TRENDS IN BIOCHEMICAL SCIENCES
- Re-evaluating the Localization of Sperm-Retained Histones Revealed the Modification-Dependent Accumulation in Specific Genome Regions
- (2018) Kosuke Yamaguchi et al. Cell Reports
- BRDT is an essential epigenetic regulator for proper chromatin organization, silencing of sex chromosomes and crossover formation in male meiosis
- (2018) Marcia Manterola et al. PLoS Genetics
- RNF8 and SCML2 cooperate to regulate ubiquitination and H3K27 acetylation for escape gene activation on the sex chromosomes
- (2018) Shannel R. Adams et al. PLoS Genetics
- An Efficient Approach for Selective Enrichment of Histone Modification Readers Using Self-Assembled Multivalent Photoaffinity Peptide Probes
- (2018) Guijin Zhai et al. ANALYTICAL CHEMISTRY
- Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis
- (2018) Yao Chen et al. CELL RESEARCH
- Lysine benzoylation is a histone mark regulated by SIRT2
- (2018) He Huang et al. Nature Communications
- Enhancer Activity Requires CBP/P300 Bromodomain-Dependent Histone H3K27 Acetylation
- (2018) Ryan Raisner et al. Cell Reports
- Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells
- (2018) Hitoshi Shiota et al. Cell Reports
- Beyond histone acetylation—writing and erasing histone acylations
- (2018) Shuai Zhao et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
- (2018) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells
- (2017) Sophie Barral et al. MOLECULAR CELL
- Chromodomain Protein CDYL Acts as a Crotonyl-CoA Hydratase to Regulate Histone Crotonylation and Spermatogenesis
- (2017) Shumeng Liu et al. MOLECULAR CELL
- KAT2A coupled with the α-KGDH complex acts as a histone H3 succinyltransferase
- (2017) Yugang Wang et al. NATURE
- Histone propionylation is a mark of active chromatin
- (2017) Adam F Kebede et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers
- (2017) Monica Soldi et al. NUCLEIC ACIDS RESEARCH
- MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones
- (2017) Sara El Kennani et al. Epigenetics & Chromatin
- YEATS2 links histone acetylation to tumorigenesis of non-small cell lung cancer
- (2017) Wenyi Mi et al. Nature Communications
- Characterization of histone acylations links chromatin modifications with metabolism
- (2017) Johayra Simithy et al. Nature Communications
- Histone propionylation is a mark of active chromatin
- (2017) Adam F Kebede et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- SOX30 is required for male fertility in mice
- (2017) Chun-Wei Allen Feng et al. Scientific Reports
- Testis-specific transcriptional regulators selectively occupy BORIS-bound CTCF target regions in mouse male germ cells
- (2017) Samuel Rivero-Hinojosa et al. Scientific Reports
- Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes
- (2017) Yoon Hee Jung et al. Cell Reports
- MOF as an evolutionarily conserved histone crotonyltransferase and transcriptional activation by histone acetyltransferase-deficient and crotonyltransferase-competent CBP/p300
- (2017) Xiaoguang Liu et al. Cell Discovery
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- YEATS2 is a selective histone crotonylation reader
- (2016) Dan Zhao et al. CELL RESEARCH
- Quantitative Profiling of Combinational K27/K36 Modifications on Histone H3 Variants in Mouse Organs
- (2016) Yanyan Yu et al. JOURNAL OF PROTEOME RESEARCH
- Metabolic Regulation of Gene Expression by Histone Lysine β-Hydroxybutyrylation
- (2016) Zhongyu Xie et al. MOLECULAR CELL
- Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters
- (2016) Afsaneh Goudarzi et al. MOLECULAR CELL
- Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain
- (2016) Yuanyuan Li et al. MOLECULAR CELL
- Structure of p300 in complex with acyl-CoA variants
- (2016) Zuzanna Kaczmarska et al. Nature Chemical Biology
- Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2
- (2016) Xiaozhe Xiong et al. Nature Chemical Biology
- The Taf14 YEATS domain is a reader of histone crotonylation
- (2016) Forest H Andrews et al. Nature Chemical Biology
- Metabolic regulation of gene expression through histone acylations
- (2016) Benjamin R. Sabari et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Expression and epigenomic landscape of the sex chromosomes in mouse post-meiotic male germ cells
- (2016) Charlotte Moretti et al. Epigenetics & Chromatin
- Comprehensive analysis of histone post-translational modifications in mouse and human male germ cells
- (2016) Lacey J. Luense et al. Epigenetics & Chromatin
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
- (2015) Guangchuang Yu et al. BIOINFORMATICS
- Poised chromatin and bivalent domains facilitate the mitosis-to-meiosis transition in the male germline
- (2015) Ho-Su Sin et al. BMC BIOLOGY
- The interplay of histone modifications - writers that read
- (2015) T. Zhang et al. EMBO REPORTS
- Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
- (2015) Elizabeth Ing-Simmons et al. GENOME RESEARCH
- Metabolic Regulation by Lysine Malonylation, Succinylation, and Glutarylation
- (2015) Matthew D. Hirschey et al. MOLECULAR & CELLULAR PROTEOMICS
- Characterization of BRD4 during Mammalian Postmeiotic Sperm Development
- (2015) Jessica M. Bryant et al. MOLECULAR AND CELLULAR BIOLOGY
- Chromatin proteomic profiling reveals novel proteins associated with histone-marked genomic regions
- (2015) Xiong Ji et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Stage-specific signaling pathways during murine testis development and spermatogenesis: A pathway-based analysis to quantify developmental dynamics
- (2015) Susanna H. Wegner et al. REPRODUCTIVE TOXICOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- Chromatin and Transcription Transitions of Mammalian Adult Germline Stem Cells and Spermatogenesis
- (2014) Saher Sue Hammoud et al. Cell Stem Cell
- SSTY proteins co-localize with the post-meiotic sex chromatin and interact with regulators of its expression
- (2014) Aurélie Comptour et al. FEBS Journal
- Genome-Scale Acetylation-Dependent Histone Eviction during Spermatogenesis
- (2014) Afsaneh Goudarzi et al. JOURNAL OF MOLECULAR BIOLOGY
- Stable-isotope-labeled Histone Peptide Library for Histone Post-translational Modification and Variant Quantification by Mass Spectrometry
- (2014) Shu Lin et al. MOLECULAR & CELLULAR PROTEOMICS
- Lysine 2-hydroxyisobutyrylation is a widely distributed active histone mark
- (2014) Lunzhi Dai et al. Nature Chemical Biology
- A specific CBP/p300-dependent gene expression programme drives the metabolic remodelling in late stages of spermatogenesis
- (2014) F. Boussouar et al. Andrology
- Identification of ‘erasers’ for lysine crotonylated histone marks using a chemical proteomics approach
- (2014) Xiucong Bao et al. eLife
- Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
- (2013) Jakob Lovén et al. CELL
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction
- (2013) G. C. A. Taylor et al. GENOME RESEARCH
- Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa
- (2013) Serap Erkek et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis
- (2013) Haiyun Gan et al. Nature Communications
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- Bpipe: a tool for running and managing bioinformatics pipelines
- (2012) Simon P. Sadedin et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Asymmetrically Modified Nucleosomes
- (2012) Philipp Voigt et al. CELL
- Histone Recognition and Large-Scale Structural Analysis of the Human Bromodomain Family
- (2012) Panagis Filippakopoulos et al. CELL
- Bromodomain-dependent stage-specific male genome programming by Brdt
- (2012) Jonathan Gaucher et al. EMBO JOURNAL
- Lysine Succinylation and Lysine Malonylation in Histones
- (2012) Zhongyu Xie et al. MOLECULAR & CELLULAR PROTEOMICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
- (2012) Guangchuang Yu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification
- (2011) Minjia Tan et al. CELL
- The double face of the histone variant H3.3
- (2011) Emmanuelle Szenker et al. CELL RESEARCH
- Interaction of Propionylated and Butyrylated Histone H3 Lysine Marks with Brd4 Bromodomains
- (2010) Friederike Vollmuth et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Systematic screen reveals new functional dynamics of histones H3 and H4 during gametogenesis
- (2010) J. Govin et al. GENES & DEVELOPMENT
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- Histone H3K27ac separates active from poised enhancers and predicts developmental state
- (2010) M. P. Creyghton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Genome reprogramming during sporulation
- (2009) Jerome Govin et al. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY
- Mitogen-activated protein kinases in male reproductive function
- (2009) Michelle W.M. Li et al. TRENDS IN MOLECULAR MEDICINE
- The Multicopy Gene Sly Represses the Sex Chromosomes in the Male Mouse Germline after Meiosis
- (2009) Julie Cocquet et al. PLOS BIOLOGY
- The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression
- (2008) Jacob L Mueller et al. NATURE GENETICS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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