The genome of a cave plant, Primulina huaijiensis , provides insights into adaptation to limestone karst habitats
出版年份 2020 全文链接
标题
The genome of a cave plant,
Primulina huaijiensis
, provides insights into adaptation to limestone karst habitats
作者
关键词
-
出版物
NEW PHYTOLOGIST
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2020-04-10
DOI
10.1111/nph.16588
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
- (2020) Zheng Li et al. GigaScience
- Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms
- (2019) Shengdan Wu et al. Molecular Plant
- Impact of whole-genome duplication events on diversification rates in angiosperms
- (2018) Jacob B. Landis et al. AMERICAN JOURNAL OF BOTANY
- Double the Genome, Double the Fun: Genome Duplications in Angiosperms
- (2018) Yuannian Jiao Molecular Plant
- Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms
- (2018) Ren Ren et al. Molecular Plant
- Discovery of a diverse cave flora in China
- (2018) Alexandre K. Monro et al. PLoS One
- wgd—simple command line tools for the analysis of ancient whole-genome duplications
- (2018) Arthur Zwaenepoel et al. BIOINFORMATICS
- Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments
- (2018) Ning Wang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Speciation history of a species complex of Primulina eburnea (Gesneriaceae) from limestone karsts of southern China, a biodiversity hot spot
- (2017) Jing Wang et al. Evolutionary Applications
- Genomic Signature of Adaptive Divergence despite Strong Nonadaptive Forces on Edaphic Islands: A Case Study of Primulina juliae
- (2017) Jing Wang et al. Genome Biology and Evolution
- Both temperature fluctuations and East Asian monsoons have driven plant diversification in the karst ecosystems from southern China
- (2017) Hanghui Kong et al. MOLECULAR ECOLOGY
- Disparity, diversity, and duplications in the Caryophyllales
- (2017) Stephen A. Smith et al. NEW PHYTOLOGIST
- Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower
- (2017) Patrick P. Edger et al. PLANT CELL
- Time-calibrated phylogenetic trees establish a lag between polyploidisation and diversification in Nicotiana (Solanaceae)
- (2017) James J. Clarkson et al. PLANT SYSTEMATICS AND EVOLUTION
- Genome of wild olive and the evolution of oil biosynthesis
- (2017) Turgay Unver et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Scallop genome provides insights into evolution of bilaterian karyotype and development
- (2017) Shi Wang et al. Nature Ecology & Evolution
- Ancient WGD events as drivers of key innovations in angiosperms
- (2016) Pamela S Soltis et al. CURRENT OPINION IN PLANT BIOLOGY
- A novel hotspot of vertebrate endemism and an evolutionary refugium in tropical Australia
- (2016) Paul M. Oliver et al. DIVERSITY AND DISTRIBUTIONS
- iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
- (2016) Yi Zheng et al. Molecular Plant
- Genome sequence and genetic diversity of European ash trees
- (2016) Elizabeth S. A. Sollars et al. NATURE
- Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms
- (2016) Zhen Li et al. PLANT CELL
- Distinct Processes Drive Diversification in Different Clades of Gesneriaceae
- (2016) Eric H. Roalson et al. SYSTEMATIC BIOLOGY
- Generic recircumscription in the Loxocarpinae (Gesneriaceae), as inferred by phylogenetic and morphological data
- (2016) Carmen Puglisi et al. TAXON
- The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
- (2016) Jian Huang et al. PLoS Genetics
- Geographical pattern of isolation and diversification in karst habitat islands: a case study in thePrimulina eburneacomplex
- (2015) Yong Gao et al. JOURNAL OF BIOGEOGRAPHY
- Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
- (2015) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications
- (2015) David C. Tank et al. NEW PHYTOLOGIST
- Repeated whole-genome duplication, karyotype reshuffling and biased retention of stress-responding genes in Buckler Mustards
- (2015) Céline Geiser et al. PLANT CELL
- The butterfly plant arms-race escalated by gene and genome duplications
- (2015) Patrick P. Edger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Early genome duplications in conifers and other seed plants
- (2015) Z. Li et al. Science Advances
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Untangling the influence of phylogeny, soil and climate on leaf element concentrations in a biodiversity hotspot
- (2014) Zhuan Hao et al. FUNCTIONAL ECOLOGY
- Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
- (2014) Ya Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comparative transcriptome resources of elevenPrimulinaspecies, a group of ‘stone plants’ from a biodiversity hot spot
- (2014) Bin Ai et al. Molecular Ecology Resources
- Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayroseet al. (2011)
- (2014) Douglas E. Soltis et al. NEW PHYTOLOGIST
- Adaptive and nonadaptive genome size evolution in Karst endemic flora of China
- (2014) Ming Kang et al. NEW PHYTOLOGIST
- Allopolyploidy, diversification, and the Miocene grassland expansion
- (2014) Matt C. Estep et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phylogenetic analyses of Begonia sect. Coelocentrum and allied limestone species of China shed light on the evolution of Sino-Vietnamese karst flora
- (2014) Kuo-Fang Chung et al. Botanical Studies
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
- (2013) Joshua N Burton et al. NATURE BIOTECHNOLOGY
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Genome sequencing and population genomics in non-model organisms
- (2013) Hans Ellegren TRENDS IN ECOLOGY & EVOLUTION
- ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments
- (2012) Zhang Zhang et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model
- (2012) M Eric Schranz et al. CURRENT OPINION IN PLANT BIOLOGY
- Polyploidy and its effect on evolutionary success: old questions revisited with new tools
- (2012) A Madlung HEREDITY
- Diversity, classification and function of the plant protein kinase superfamily
- (2012) M. D. Lehti-Shiu et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
- (2011) Sebastian Proost et al. NUCLEIC ACIDS RESEARCH
- Recently Formed Polyploid Plants Diversify at Lower Rates
- (2011) I. Mayrose et al. SCIENCE
- Circoletto: visualizing sequence similarity with Circos
- (2010) N. Darzentas BIOINFORMATICS
- WRKY transcription factors
- (2010) Paul J. Rushton et al. TRENDS IN PLANT SCIENCE
- KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
- (2010) Dapeng Wang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Polyploidy and angiosperm diversification
- (2009) Douglas E. Soltis et al. AMERICAN JOURNAL OF BOTANY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The evolutionary significance of ancient genome duplications
- (2009) Yves Van de Peer et al. NATURE REVIEWS GENETICS
- PlnTFDB: updated content and new features of the plant transcription factor database
- (2009) Paulino Pérez-Rodríguez et al. NUCLEIC ACIDS RESEARCH
- The frequency of polyploid speciation in vascular plants
- (2009) T. E. Wood et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Evolutionary Genetics of Genome Merger and Doubling in Plants
- (2008) Jeff J. Doyle et al. Annual Review of Genetics
- Genomic Clues to the Evolutionary Success of Polyploid Plants
- (2008) Matthew J. Hegarty et al. CURRENT BIOLOGY
- Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter
- (2008) Xiaolan Wu et al. PLANT CELL REPORTS
- Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses
- (2008) Yuanqing Jiang et al. PLANT MOLECULAR BIOLOGY
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
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