Article
Engineering, Environmental
Ye Sun, Mingwei Wang, Lianfu Liang, Cheng Sun, Xuepeng Wang, Zhenxin Wang, Yaobin Zhang
Summary: This study investigated the effects of adding Fenton sludge to anaerobic digesters. The results showed that continuously feeding Fenton sludge increased methane production and COD removal rate, while maintaining the activity of anaerobic digestion. Additionally, the addition of Fenton sludge enriched iron-reducing bacteria and enhanced electron transfer. These findings suggest that feeding Fenton sludge into anaerobic digesters is a feasible method for treatment and performance enhancement.
Article
Environmental Sciences
Xi Yang, Qingjun Guo, Valeria Boyko, Khoren Avetisyan, Alyssa J. Findlay, Fang Huang, Zhongliang Wang, Zhenwu Chen
Summary: This study focuses on Sihailongwan Lake and examines the record of iron isotope fractionation in sedimentary rock, demonstrating the usefulness of iron isotopes from modern natural environments in reconstructing iron oxidation-reduction processes during Earth's early history.
SCIENCE OF THE TOTAL ENVIRONMENT
(2022)
Article
Environmental Sciences
Zexuan He, Jifei Chang, Yujie Feng, Shu Wang, Qing Yuan, Danhui Liang, Jia Liu, Nan Li
Summary: This study investigates the impact of carbon nanotubes (CNTs) on vivianite formation. The results show that the addition of CNTs can increase the production rate of vivianite. However, at the initial stage, CNTs can decrease the efficiency of iron reduction due to the damage to the cell membrane. In addition, the biotoxicity of CNTs stimulates a defense response in dissimilative iron-reducing bacteria (DIRB).
SCIENCE OF THE TOTAL ENVIRONMENT
(2022)
Article
Geochemistry & Geophysics
Kathryn I. Rico, Manuel Schad, Aude Picard, Andreas Kappler, Kurt O. Konhauser, Nagissa Mahmoudi
Summary: Banded Iron Formations (BIFs) have long been thought to be a sedimentary record of seawater trace metal composition, but recent research suggests that much of the trace metals could have come from phytoplankton biomass. This study tested the hypothesis that heterotrophic bacteria degrade the biomass and release the trace metals. The results show that while one type of bacterium can consume carbon substrates in the biomass, there is no evidence that it degrades metalloproteins to liberate trace metals.
EARTH AND PLANETARY SCIENCE LETTERS
(2023)
Article
Geochemistry & Geophysics
Jianbai Ma, Xiaoying Shi, Maxwell Lechte, Xiqiang Zhou, Zhenfei Wang, Kangjun Huang, Maxim Rudmin, Dongjie Tang
Summary: This study provides geological evidence for enhanced reverse weathering during the mid-Proterozoic era, which may have helped maintain a high-pCO2 level. The presence of authigenic clays in the sedimentary record supports the hypothesis that high pCO2 was maintained by elevated rates of marine authigenic clay formation.
AMERICAN MINERALOGIST
(2022)
Article
Environmental Sciences
Sunhui Lee, Edward J. O'Loughlin, Man Jae Kwon
Summary: Urban subsurface environments are often impacted by human activities, leading to elevated levels of organic and inorganic compounds in the soil and groundwater. Microbial reactions, mineral transformations, and microbial community transitions in these environments are poorly understood. Factors such as organic acid concentration and sulfate levels can greatly impact microbial reactions in different soil layers.
JOURNAL OF ENVIRONMENTAL MANAGEMENT
(2021)
Article
Environmental Sciences
Leah R. Trutschel, Grayson L. Chadwick, Brittany Kruger, Jennifer G. Blank, William J. Brazelton, Emily R. Dart, Annette R. Rowe
Summary: Ney Springs, a continental serpentinizing spring, exhibits geochemical characteristics similar to marine serpentinizing systems. It has high sulfide concentrations and methane emissions, supporting microbial activity. The microbial community is dominated by fermentative organisms and includes chemolithoheterotrophs capable of oxidizing thiosulfate under high alkaline conditions.
SCIENCE OF THE TOTAL ENVIRONMENT
(2022)
Article
Agricultural Engineering
Xuejiao Qiao, Chenkun Fu, Yizhen Chen, Fang Fang, Yaoyu Zhang, Lingyun Ding, Kai Yang, Baozhu Pan, Nan Xu, Ke Yu, Huchun Tao, Lijuan Zhang
Summary: It was found that 20 μg/L of fluoroquinolones promoted the nitrogen removal performance of anammox microorganisms and removed 36-51% of the drugs. Metabolomics and genome-resolved metagenomic analysis revealed enhanced carbon fixation, purine and pyrimidine metabolism, protein generation, and transmembrane transport in anammox bacteria and symbiotic bacteria in response to 20 μg/L of fluoroquinolones. Consequently, hydrazine dehydrogenation, nitrite reduction, and ammonium assimilation were bolstered, improving the nitrogen removal efficiency of the anammox system.
BIORESOURCE TECHNOLOGY
(2023)
Article
Engineering, Geological
L. G. C. S. Correia, M. Ehrlich, M. B. Mendonca, C. N. Keim
Summary: This study investigated the clogging effect of ochre on geotextile filters through column tests and found that ochre formation is reduced under submerged conditions, and reductive dissolution can reverse the clogging of the filter.
CANADIAN GEOTECHNICAL JOURNAL
(2022)
Article
Engineering, Geological
L. G. C. S. Correia, M. Ehrlich, M. B. Mendonca, C. N. Keim
Summary: Column tests were conducted to understand the factors leading to the clogging of drainage systems due to ochre formation. It was found that ochre formation decreased substantially in submerged filters due to lower oxygen availability. Percolation with D-glucose reduced oxygen content, lowered pH, and stimulated iron-reducing bacteria, which reversed clogging.
CANADIAN GEOTECHNICAL JOURNAL
(2023)
Article
Geology
Zhiyong Lin, Xiaoming Sun, Andrew P. Roberts, Harald Strauss, Yang Lu, Xin Yang, Junli Gong, Guanhua Li, Benjamin Brunner, Jorn Peckmann
Summary: The study reports a novel authigenic nanoscale magnetite source in marine methane seep sediments, with characteristics of larger particles and distinctive structures, mainly as a byproduct of microbial iron reduction within methanic sediments with rapidly changing redox conditions. This magnetite may have formed due to alterations in redox conditions within methane sediments.
Article
Microbiology
Xi Xiao, Min Luo, Chuwen Zhang, Tingting Zhang, Xiuran Yin, Xuemin Wu, Jing Zhao, Jun Tao, Zongheng Chen, Qianyong Liang, Xiyang Dong
Summary: Metal-dependent anaerobic oxidation of methane (AOM) was found to be an important methane sink in methanic cold seep sediments in the northern continental slope of the South China Sea. Diverse anaerobic methanotrophic archaea (ANME) groups were identified to actively mediate methane oxidation, potentially in syntrophy with metal reducers. Fe-AOM and Mn-AOM were estimated to account for about 3% of total methane removal in the sediments.
MICROBIOLOGY SPECTRUM
(2023)
Article
Engineering, Environmental
T. Prot, L. Korving, A. Dugulan, K. Goubitz, M. C. M. van Loosdrecht
Summary: The article highlights the issue of vivianite scaling in wastewater sludge, caused by the presence of soluble iron and phosphorus. Vivianite scaling was found to be common in wastewater treatment plants worldwide, with identified formations occurring in anaerobic zones, dewatering centrifuges of undigested sludge, and heat exchangers around mesophilic digesters. Mitigation solutions and best practices for safe sludge mixing were discussed in the study, emphasizing the relevance of ironphosphate scaling and the potential increase in the use of iron coagulants in the future to meet stricter phosphorus discharge limits.
Article
Environmental Sciences
Ke Zhang, Xiangling Wu, Jia Chen, Wei Wang, Hongbing Luo, Wei Chen, Dandan Ma, Xiaochan An, Zhaolan Wei
Summary: This study proposed an effective method to reduce methane emissions from constructed wetlands by introducing Mn-dependent anaerobic oxidation of methane (Mn-AOM) and microbial fuel cell (MFC) technology. The results showed that combining biological methods and bioelectrochemical methods can more effectively control methane emissions from constructed wetlands. Using Mn ore as the matrix and operating MFC effectively reduced methane emissions from constructed wetlands, with higher COD removal rate obtained in CW-MFC (Mn) during the 200 days of operation.
JOURNAL OF ENVIRONMENTAL MANAGEMENT
(2021)
Article
Engineering, Environmental
Wen-Bo Nie, Jie Ding, Guo-Jun Xie, Xin Tan, Yang Lu, Lai Peng, Bing-Feng Liu, De-Feng Xing, Zhiguo Yuan, Nanqi Ren
Summary: ANME archaea can mediate simultaneous sulfate- and nitrate-dependent anaerobic oxidation of methane, forming a crucial link between the carbon, nitrogen, and sulfur cycles in natural environments. They collaborate with sulfate-reducing bacteria to convert sulfate to sulfide and then sulfide-oxidizing autotrophic denitrifiers to oxidize sulfide back to sulfate, thereby alleviating sulfide accumulation. The unique nanonets formed by ANME-2d and SRB likely facilitate electron transfer, highlighting the complex interactions in methane oxidation processes.
Article
Microbiology
Nikolai Ravin, Simona Rossetti, Alexey Beletsky, Vitaly V. Kadnikov, Tatyana S. Rudenko, Dmitry D. Smolyakov, Marina Moskvitina, Maria Gureeva, Andrey Mardanov, Margarita Yu Grabovich
Summary: The metagenome of fouling from a sulfidic spring in Russia was sequenced, and the dominant microbial community consisted of members of the phyla Gammaproteobacteria, Cyanobacteria, and Campilobacteriota. The complete genomes of two Thiothrix species, Thiothrix sulfatifontis and Thiothrix winogradskyi, were assembled and their taxonomic status was determined. The study also observed the anaerobic growth of Thiothrix in the presence of thiosulfate for the first time.
Article
Microbiology
Yury Nikolaev, Yulia Yushina, Andrey Mardanov, Evgeniy Gruzdev, Ekaterina Tikhonova, Galina El-Registan, Aleksey Beletskiy, Anastasia Semenova, Elena Zaiko, Dagmara Bataeva, Ekaterina Polishchuk
Summary: Biofilm contamination in food production poses a threat to food quality and safety. This study examined the taxonomy and structure of biofilms in five different food samples from a meat-processing plant in Moscow, Russia. Metagenomic analysis revealed similarities in the dominant microorganisms across different samples, as well as unique families on specific objects. The identified bacteria belonged to 11 phyla, including potential spoilage and opportunistic pathogens. Electron microscopy showed diverse cell morphotypes, morphological similarity across samples, and heterogeneity within microcolonies in terms of cell age and polymer matrix chemical nature.
Article
Geosciences, Multidisciplinary
Tatiana Alekseeva, Pavel Kalinin, Vladislav Malishev, Andrey Alekseev
Summary: This paper presents a detailed multidisciplinary study of a Pre-Eifelian paleosol developed from rhyolite lava in Voronezh region, Russia. The paleosol contains abundant fossils and minerals and exhibits characteristics of acidic sulfate soil. Based on geochemical data, the researchers infer that it corresponds to a subtropical climate with an annual precipitation of 1200-1300 mm and an average temperature of -17 degrees C.
Article
Biochemistry & Molecular Biology
Tamara Tikhonova, Evgenii M. Osipov, Natalia I. Dergousova, Anastasia Y. Solovieva, Konstantin M. Boyko, Ivan M. Elizarov, Sergey N. Gavrilov, Maria G. Khrenova, Frank T. Robb, Elizaveta A. Bonch-Osmolovskaya, Vladimir O. Popov
Summary: The paper investigates Carboxydothermus ferrireducens, a thermophilic anaerobic Gram-positive bacterium that utilizes insoluble Fe(III) oxides as electron acceptors with the help of extracellular 11-heme cytochrome c OmhA as a terminal reductase. OmhA can transfer electrons to both soluble and insoluble Fe(III) compounds, as well as substrates of multiheme oxidoreductases and soluble electron shuttles. The crystal structure of OmhA reveals two distinct parts: the cytochrome's electron transfer domain and the S-layer binding domain. The article discusses the embedding of extracellular multiheme cytochromes to the S-layer of a Gram-positive-type cell wall and the potential electron transfer pathways to insoluble minerals.
Article
Microbiology
Olga V. Karnachuk, Alexey V. Beletsky, Andrey L. Rakitin, Olga P. Ikkert, Marat R. Avakyan, Viacheslav S. Zyusman, Andrei Napilov, Andrey V. Mardanov, Nikolai V. Ravin
Summary: Sulphate-reducing bacteria, particularly Desulfovibrio, play a key role in the production of H2S in swine waste. Desulfovibrio vulgaris strain L2, a model organism for sulphate reduction studies, can utilize animal farming supplements as electron acceptors for H2S production. The genome sequencing of strain L2 revealed the presence of antibiotic resistance genes (ARG) and genes conferring resistance to mercury. These resistance genes are likely acquired through horizontal gene transfer from other bacteria. The presence of ARGs on mobile genetic elements suggests strain L2 may contribute to the transfer of antimicrobial resistance determinants between the gut microbiota and environmental microbial communities.
Article
Biology
Vitaly V. Kadnikov, Andrey V. Mardanov, Alexey V. Beletsky, Olga V. Karnachuk, Nikolai V. Ravin
Summary: The research focused on prokaryotic communities near hot gas vents in an open quarry impacted by underground coal fire. The dominant species were identified as spore-forming Firmicutes, which were capable of obtaining energy from hydrogen and carbon monoxide in coal gases. The analysis also revealed the genome of a previously uncultured bacterium, which was found to be rod-shaped and potentially involved in scavenging and fermenting organics produced by autotrophic Firmicutes.
Article
Biotechnology & Applied Microbiology
Andrey V. Mardanov, Eugeny V. Gruzdev, Alexey V. Beletsky, Elena V. Ivanova, Maksim Yu. Shalamitskiy, Tatiana N. Tanashchuk, Nikolai V. Ravin
Summary: The genome sequencing of industrial flor yeast strain I-329 and its derivatives from the winery Magarach revealed genetic stability under biological wine aging. The analysis of 18S rRNA gene and metagenomes showed that the batch aging process had a higher proportion of bacteria in the flor velum compared to the continuous process.
FERMENTATION-BASEL
(2023)
Article
Biochemistry & Molecular Biology
Nikolai V. Ravin, Maria S. Muntyan, Dmitry D. Smolyakov, Tatyana S. Rudenko, Alexey V. Beletsky, Andrey V. Mardanov, Margarita Yu. Grabovich
Summary: Two metagenome-assembled genomes related to the family Thiotrichaceae were obtained from a sulfide-rich thermal spring. They were identified as new species and genera, showing metabolic versatility and adaptability.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Environmental Sciences
Nikolai Pimenov, Yuri Nikolaev, Vladimir Grachev, Anna Kallistova, Alexander Dorofeev, Yuriy Litti, Evgeny Gruzdev, Alexey Beletsky, Nikolai Ravin, Andrey Mardanov
Summary: This study investigated the impact of sulfide on nitrogen transformation and removal efficiency in the Anammox process. The results showed that sulfide had little effect on nitrogen removal efficiency during ammonium oxidation and anammox, but it had a certain inhibitory effect on nitrite oxidation. Furthermore, sulfide had different effects on the growth rate of different types of nitrifying bacteria. However, further research is needed to understand these findings.
Article
Environmental Sciences
Alexander Dorofeev, Anna Pelevina, Yuri Nikolaev, Yulia Berestovskaya, Evgeny Gruzdev, Andrey Mardanov, Nikolai Pimenov
Summary: This study investigated the substrate range of Ca. Accumulibacter by measuring its oxygen uptake rates (OUR) with 17 different organic substrates. The results showed that Ca. Accumulibacter preferred tryptone, volatile fatty acids, succinate, pyruvate, and amino acids as substrates. The possible pathways for substrate transport and metabolism by Ca. Accumulibacter were discussed using stoichiometric data and metagenomic analysis.
Article
Microbiology
Nikolai V. Ravin, Dmitry D. Smolyakov, Nikita D. Markov, Alexey V. Beletsky, Andrey V. Mardanov, Tatyana S. Rudenko, Margarita Yu. Grabovich
Summary: The study proposes the use of tRNA(Ile)-lysidine synthase (tilS) and beta subunit of RNA polymerase (rpoB) genes as phylogenetic markers for the genus Thiothrix. Taxonomic analysis using these genes showed that MK1 and WS belong to Thiothrix lacustris, while DNT52, DNT53, and H33 belong to Thiothrix subterranea. High-throughput sequencing of tilS gene fragments revealed the presence of new Thiothrix species.
Review
Food Science & Technology
Maksim Yu. Shalamitskiy, Tatiana N. Tanashchuk, Sofia N. Cherviak, Egor A. Vasyagin, Nikolai V. Ravin, Andrey V. Mardanov
Summary: Ethyl carbamate, a probable human carcinogen, is found in fermented foods and alcoholic beverages. This review summarizes its formation mechanisms, impact on human health, and methods used to minimize its content.
Article
Biology
Vitaly V. Kadnikov, Nikolai V. Ravin, Diyana S. Sokolova, Ekaterina M. Semenova, Salimat K. Bidzhieva, Alexey V. Beletsky, Alexey P. Ershov, Tamara L. Babich, Marat R. Khisametdinov, Andrey V. Mardanov, Tamara N. Nazina
Summary: The microbial community composition of petroleum reservoirs with high-salinity formation water in Tatarstan, Russia was studied using metagenomic and culture-based approaches. The results showed that different microbial species play different roles in the reservoirs, and it is necessary to consider both the activation of fermentative bacteria and the suppression of sulfidogenesis when choosing MEOR technologies.
Article
Microbiology
Andrey V. Mardanov, Alexey V. Beletsky, Egor A. Vasyagin, Tatiana N. Tanashchuk, Maxim Yu. Shalamitskiy, Nikolai V. Ravin
Summary: This study reports the complete circular genome sequence of the important lactic acid bacteria Oenococcus oeni strain K19-3, which is capable of carrying out malolactic fermentation and improving the organoleptic properties of wine. It was isolated from red grape must at Crimean wineries.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS
(2023)
Article
Microbiology
Aleksandr G. Bulaev, Aleksandra V. Kanygina, Andrey V. Mardanov
Summary: Here, we report the draft genome sequence of Acidiplasma cupricumulans Strain BH2(T), a type strain isolated from a pregnant leachate solution of an industrial-scale chalcocite bioleach heap in Monywa, Myanmar. The genome is 1.7 Mbp in length with a GC content of 34.2%.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS
(2023)
Article
Geochemistry & Geophysics
Zhen-Min Ge, Xiao-Long Huang, Wei Xie, Tobias W. Hofig, Fan Yang, Yang Yu, S. Khogenkumar Singh
Summary: The mantle source composition of the nascent oceanic crust in the central part of the Gulf of California has been investigated using basaltic glass samples. These samples show trace element patterns similar to enriched mid-ocean ridge basalts, suggesting that the nascent oceanic crust in the Guaymas Basin might be generated through partial melting of a depleted mantle source metasomatized by subducted slab materials.
Article
Geochemistry & Geophysics
Jean-Michel Brazier, Katja E. Goetschl, Martin Dietzel, Vasileios Mavromatis
Summary: This study estimated the distribution coefficient of Zn2+ between calcite/aragonite and reactive fluids and found that the growth rate strongly influences D-Zn(2+) in both minerals. Additionally, a linear correlation was found between D-Zn(2+) and the saturation degree of the reactive fluid.
Article
Geochemistry & Geophysics
Ming Lei, Michele Lustrino, Jifeng Xu, Zhiqiang Kang, Zhengfu Guo, Jianlin Chen
Summary: This study presents a comprehensive geochronological, mineralogical, and geochemical analysis of olivine leucitites in the Maiga area of southern Tibet, suggesting that these rocks originate from a carbonated peridotite mantle source and highlighting the possibility of carbonates being recycled deep into the mantle during continental subduction.
Article
Geochemistry & Geophysics
Yuntao Ye, Xiaomei Wang, Huajian Wang, Haifeng Fan, Zhigang Chen, Qingjun Guo, Ziteng Wang, Chaodong Wu, Donald E. Canfield, Shuichang Zhang
Summary: Phosphorus is an essential element for life and its cycle in the ocean is closely connected with the carbon and oxygen cycles. The study of phosphate oxygen isotopes can provide insights into various reactions related to phosphorus. By analyzing carbonate fluorapatite samples from the Mesoproterozoic Era in North China, it was found that the oxygen isotope values were lower compared to modern samples, indicating a warmer climate during that time period and a potential reason for the scarcity of phosphorite.
Article
Geochemistry & Geophysics
Vincent Busigny, Oanez Lebeau, Didier Jezeduel, Carine Chaduteau, Sean Crowe, Magali Ader
Summary: This study conducted high-precision Mo isotope research on hydrothermal metal sulfides from a porphyry copper deposit in Southwest China and found that different stages of mineralization have distinct Mo isotope compositions, providing valuable insights into the behavior of Mo isotopes in magmatic-hydrothermal systems.
Article
Geochemistry & Geophysics
Min Ji, Xiao-Ying Gao, Yong-Fei Zheng, Bing Gong
Summary: The study examines the anatectic mechanisms in the Himalayan orogen, finding that pressure and temperature control the reaction, while water content mainly affects the solid-phase composition. Dehydration and hydration melting likely occur at different depths in the crust. This research provides important insights into the melting processes in collisional orogens.