4.7 Article

Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China

期刊

LANCET INFECTIOUS DISEASES
卷 20, 期 7, 页码 803-808

出版社

ELSEVIER SCI LTD
DOI: 10.1016/S1473-3099(20)30229-2

关键词

-

资金

  1. US National Institute of General Medical Sciences (NIGMS) [U54GM088558]
  2. Fellowship Foundation Ramon Areces
  3. NIGMS Maximizing Investigator's Research Award [R35GM124715-02]

向作者/读者索取更多资源

Background The incidence of coronavirus disease 2019 (COVID-19) in Wuhan, China, has been estimated using imported case counts of international travellers, generally under the assumptions that all cases of the disease in travellers have been ascertained and that infection prevalence in travellers and residents is the same. However, findings indicate variation among locations in the capacity for detection of imported cases. Singapore has had very strong epidemiological surveillance and contact tracing capacity during previous infectious disease outbreaks and has consistently shown high sensitivity of casedetection during the COVID-19 outbreak. Methods We used a Bayesian modelling approach to estimate the relative capacity for detection of imported cases of COVID-19 for 194 locations (excluding China) compared with that for Singapore. We also built a simple mathematical model of the point prevalence of infection in visitors to an epicentre relative to that in residents. Findings The weighted global ability to detect Wuhantolocation imported cases of COVID-19 was estimated to be 38% (95% highest posterior density interval [HPDI] 22-64) of Singapore.s capacity. This value is equivalent to 2.8 (95% HPDI 1.5-4.4) times the current number of imported and reported cases that could have been detected if all locations had had the same detection capacity as Singapore. Using the second component of the Global Health Security index to stratify likely casedetection capacities, the ability to detect imported cases relative to Singapore was 40% (95% HPDI 22-67) among locations with high surveillance capacity, 37% (18-68) among locations with medium surveillance capacity, and 11% (0-42) among locations with low surveillance capacity. Treating all travellers as if they were residents (rather than accounting for the brief stay of some of these travellers in Wuhan) contributed modestly to underestimation of prevalence. Interpretation Estimates of case counts in Wuhan based on assumptions of 100% detection in travellers could have been underestimated by several fold. Furthermore, severity estimates will be inflated several fold since they also rely on case count estimates. Finally, our model supports evidence that underdetected cases of COVID-19 have probably spread in most locations around the world, with greatest risk in locations of low detection capacity and high connectivity to the epicentre of the outbreak. Funding US National Institute of General Medical Sciences, and Fellowship Foundation Ramon Areces.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Infectious Diseases

Contributions of molecular techniques in the chronic phase of Chagas disease in the absence of treatment

Elena Sulleiro, Fernando Salvador, Pablo Martinez de Salazar, Aroa Silgado, Nuria Serre-Delcor, Ines Oliveira, Zaira Moure, Adrian Sanchez-Montalva, Maria Luisa Aznar, Lidia Goterris, Israel Molina, Tomas Pumarola

ENFERMEDADES INFECCIOSAS Y MICROBIOLOGIA CLINICA (2020)

Article Multidisciplinary Sciences

Estimating internationally imported cases during the early COVID-19 pandemic

Tigist F. Menkir, Taylor Chin, James A. Hay, Erik D. Surface, Pablo M. De Salazar, Caroline O. Buckee, Alexander Watts, Kamran Khan, Ryan Sherbo, Ada W. C. Yan, Michael J. Mina, Marc Lipsitch, Rene Niehus

Summary: This study estimates case importations from 18 Chinese cities to 43 international destinations, including 26 in Africa, by combining daily COVID-19 prevalence and flight passenger volume. It finds that while global case importations from China in early January primarily came from Wuhan, the source shifted to other cities in mid-February, especially for importations to African destinations.

NATURE COMMUNICATIONS (2021)

Article Biochemical Research Methods

Practical considerations for measuring the effective reproductive number, Rt

Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos Bosse, Katharine Sherrat, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jeremie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey

PLOS COMPUTATIONAL BIOLOGY (2020)

Article Multidisciplinary Sciences

Lockdowns result in changes in human mobility which may impact the epidemiologic dynamics of SARS-CoV-2

Nishant Kishore, Rebecca Kahn, Pamela P. Martinez, Pablo M. De Salazar, Ayesha S. Mahmud, Caroline O. Buckee

Summary: During the pandemic, lockdown measures can affect human mobility patterns. Prior to the implementation of lockdowns, there was an increase in both local and long distance movement in multiple locations globally, as well as urban-to-rural migration.

SCIENTIFIC REPORTS (2021)

Article Parasitology

Assessing antibody decline after chemotherapy of early chronic Chagas disease patients

Niamh Murphy, M. Victoria Cardinal, Tapan Bhattacharyya, Gustavo F. Enriquez, Natalia P. Macchiaverna, Alejandra Alvedro, Hector Freilij, Pablo Martinez de Salazar, Israel Molina, Pascal Mertens, Quentin Gilleman, Ricardo E. Gurtler, Michael A. Miles

Summary: Chagas disease remains a major public health issue in Latin America, with limited chemotherapy options and no definitive markers of cure. Research suggests that a significant decline in IgG1 antibody levels post-treatment may indicate successful cure, while sustained or elevated IgG1 levels could be a sign of treatment failure. Although not suitable for diagnostic purposes due to limited sensitivity, IgG1 holds promise as a potential biomarker of cure with further development.

PARASITES & VECTORS (2021)

Article Biochemical Research Methods

A nowcasting framework for correcting for reporting delays in malaria surveillance

Tigist F. Menkir, Horace Cox, Canelle Poirier, Melanie Saul, Sharon Jones-Weekes, Collette Clementson, Pablo M. de Salazar, Mauricio Santillana, Caroline O. Buckee

Summary: Time lags in reporting to national surveillance systems are a major obstacle for controlling infectious diseases like malaria, particularly in rural and remote areas. In Guyana, connectivity issues among remote malaria-endemic regions hinder surveillance efforts. The study developed nowcasting methods using historical reporting delay patterns to estimate unreported monthly malaria cases, showing up to two-fold improvements in accuracy compared to known cases. This approach provides a simple and adaptable tool to enhance malaria surveillance and guide resource allocation and elimination efforts.

PLOS COMPUTATIONAL BIOLOGY (2021)

Article Biochemical Research Methods

Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data

Pablo M. De Salazar, Fred Lu, James A. Hay, Diana Gomez-Barroso, Pablo Fernandez-Navarro, Elena Martinez, Jenaro Astray-Mochales, Rocio Amillategui, Ana Garcia-Fulgueiras, Maria D. Chirlaque, Alonso Sanchez-Migallon, Amparo Larrauri, Maria J. Sierra, Marc Lipsitch, Fernando Simon, Mauricio Santillana, Miguel A. Hernan

Summary: When responding to infectious disease outbreaks, it is crucial to rapidly and accurately estimate the epidemic trajectory. This study proposes an approach to construct epidemic curves in near real time by addressing data collection problems and adjusting for right censoring. The approach allows for the estimation of the time-varying reproduction number (R-t) in real time. The framework is applied to the early SARS-CoV-2 outbreak in two Spanish regions and compared with later available epidemiological data.

PLOS COMPUTATIONAL BIOLOGY (2022)

Article Infectious Diseases

Human Trypanosoma cruzi chronic infection leads to individual level steady-state parasitemia: Implications for drug-trial optimization in Chagas disease

Pablo M. De Salazar, Sergio Sosa-Estani, Fernando Salvador, Elena Sulleiro, Adrian Sanchez-Montalva, Isabela Ribeiro, Israel Molina, Caroline O. Buckee

Summary: The study analyzes parasite dynamics in chronic Chagas disease and highlights the limitations in parasite detection methods. The researchers found that parasitemia remains at a steady-state and can be predicted probabilistically. Additionally, individuals can be categorized based on their parasitological status, allowing for a more detailed evaluation of efficacy outcomes and adjustments.

PLOS NEGLECTED TROPICAL DISEASES (2022)

Article Medicine, General & Internal

Geographically skewed recruitment and COVID-19 seroprevalence estimates: a cross-sectional serosurveillance study and mathematical modelling analysis

Tyler Brown, Pablo Martinez de Salazar Munoz, Abhishek Bhatia, Bridget Bunda, Ellen K. Williams, David Bor, James S. Miller, Amir Mohareb, Julia Thierauf, Wenxin Yang, Julian Villalba, Vivek Naranbai, Wilfredo Garcia Beltran, Tyler E. Miller, Doug Kress, Kristen Stelljes, Keith Johnson, Dan Larremore, Jochen Lennerz, A. John Iafrate, Satchit Balsari, Caroline Buckee, Yonatan Grad

Summary: Convenience sampling is an important tool for seroprevalence studies, but its geographically skewed recruitment can introduce bias and uncertainty. This study aims to quantify the influence of geographically skewed recruitment on SARS-CoV-2 seroprevalence estimates and develop new methods using GPS-derived foot traffic data to minimize bias and uncertainty. The results suggest that using GPS to select recruitment sites and record participants' home locations can improve study design and interpretation.

BMJ OPEN (2023)

Meeting Abstract Public, Environmental & Occupational Health

Daily tenofovir disoproxil fumarate/emtricitabine and hydroxychloroquine for pre-exposure prophylaxis of COVID-19: A double-blind placebo controlled randomized trial in healthcare workers. A randomized clinical trial

Xabier Garcia de Albeniz, Rosa Polo, Carolina Teran, Miguel Morales, David Rial-Crestelo, M. A. Garcinuno, Miguel Garcia del Toro, Cesar Hita, J. L. Gomez-Sirvent, Luis Buzon, Alberto Diaz de Santiago, J. L. Perez, Jesus Sanz, P. Bachiller, Elisa Martinez, Vicens Diaz-Brito, Mar Masia, Alicia Hernandez-Torres, Jose Guerra, Piedad Arazo, Jose Arribas, Pablo Martinez de Salazar, Santiago Moreno, Miguel A. Hernan, Julia del Amo

PHARMACOEPIDEMIOLOGY AND DRUG SAFETY (2022)

Meeting Abstract Public, Environmental & Occupational Health

PLASMODIUM FALCIPARUM MALARIA SURVEILLANCE IN GUYANA USING WHOLE-GENOME AND MICROHAPLOTYPE ANALYSIS

Philipp Schwabl, Angela Early, Emily LaVerriere, Pablo Martinez de Salazar, Manuela Carrasquilla, Ruchit Panchal, Tim Straub, Meg Shieh, Zack Johnson, Aimee Taylor, Margaret Laws, Bronwyn MacInnis, Lise Musset, Jean Alexandre, Helen Imhoff, Horace Cox, Caroline Buckee, Daniel Neafsey

AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2021)

Article Environmental Sciences

The association between gold mining and malaria in Guyana: a statistical inference and time-series analysis

Pablo M. De Salazar, Horace Cox, Helen Imhoff, Jean S. F. Alexandre, Caroline O. Buckee

Summary: The study found that the significant rise in Plasmodium falciparum malaria in Guyana between 2008 and 2014 was likely driven by an increase in gold mining, with climate factors potentially contributing synergistically. The international gold price can be used as a useful indicator of malaria trends.

LANCET PLANETARY HEALTH (2021)

Article Public, Environmental & Occupational Health

Estimating lengths-of-stay of hospitalised COVID-19 patients using a non-parametric model: a case study in Galicia (Spain)

Ana Lopez-Cheda, Maria-Amalia Jacome, Ricardo Cao, Pablo M. De Salazar

Summary: This study focuses on modeling the lengths-of-stay of hospitalized COVID-19 patients using real-time surveillance data, demonstrating that a non-parametric mixture cure model outperforms standard methods in estimating ICU and HW lengths-of-stay, and emphasizing the importance of adjusting for sex and age in accurately predicting occupancy rates and discharge/death outcomes.

EPIDEMIOLOGY AND INFECTION (2021)

Article Immunology

Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions

Pablo Martinez De Salazar, Rene Niehus, Aimee Taylor, Caroline O'Flaherty Buckee, Marc Lipsitch

EMERGING INFECTIOUS DISEASES (2020)

暂无数据