A theoretical framework for transitioning from patient-level to population-scale epidemiological dynamics: influenza A as a case study

Detection, forecasting and control of infectious disease epidemics: modelling outbreaks in humans, animals and plants

(2019) Robin N. Thompson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Applying optimal control theory to complex epidemiological models to inform real-world disease management

(2019) E. H. Bussell et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Linked within-host and between-host models and data for infectious diseases: a systematic review

(2019) Lauren M. Childs et al.   PeerJ

Accurate forecasts of the effectiveness of interventions against Ebola may require models that account for variations in symptoms during infection

(2019) W.S. Hart et al.   Epidemics

High-resolution epidemic simulation using within-host infection and contact data

(2018) Van Kinh Nguyen et al.   BMC PUBLIC HEALTH

Multiscale model within-host and between-host for viral infectious diseases

(2018) Alexis Erich S. Almocera et al.   JOURNAL OF MATHEMATICAL BIOLOGY

EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks

(2018) Samuel M. Jenness et al.   Journal of Statistical Software

Control fast or control smart: When should invading pathogens be controlled?

(2018) Robin N. Thompson et al.   PLoS Computational Biology

Mathematical Analysis of Viral Replication Dynamics and Antiviral Treatment Strategies: From Basic Models to Age-Based Multi-Scale Modeling

(2018) Carolin Zitzmann et al.   Frontiers in Microbiology

Zika plasma viral dynamics in nonhuman primates provides insights into early infection and antiviral strategies

(2017) Katharine Best et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of Practical Identifiability of a Viral Infection Model

(2017) Van Kinh Nguyen et al.   PLoS One

Windows of opportunity for Ebola virus infection treatment and vaccination

(2017) Van Kinh Nguyen et al.   Scientific Reports

A combined within-host and between-hosts modelling framework for the evolution of resistance to antimalarial drugs

(2016) Mathieu Legros et al.   Journal of the Royal Society Interface

A data-driven model for influenza transmission incorporating media effects

(2016) Lewis Mitchell et al.   Royal Society Open Science

How Can Viral Dynamics Models Inform Endpoint Measures in Clinical Trials of Therapies for Acute Viral Infections?

(2016) Carolin Vegvari et al.   PLoS One

Effect of Ebola Progression on Transmission and Control in Liberia

(2015) Dan Yamin et al.   ANNALS OF INTERNAL MEDICINE

Crossing the scale from within-host infection dynamics to between-host transmission fitness: a discussion of current assumptions and knowledge

(2015) Andreas Handel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nine challenges for deterministic epidemic models

(2015) Mick Roberts et al.   Epidemics

A large-scale immuno-epidemiological simulation of influenza A epidemics

(2014) Sarah Lukens et al.   BMC PUBLIC HEALTH

Epidemic dynamics and host immune response: a nested approach

(2014) Alberto Gandolfi et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Viral kinetic modeling: state of the art

(2014) Laetitia Canini et al.   JOURNAL OF PHARMACOKINETICS AND PHARMACODYNAMICS

Effects of Aging on Influenza Virus Infection Dynamics

(2014) E. A. Hernandez-Vargas et al.   JOURNAL OF VIROLOGY

Ebola Virus Disease in West Africa — The First 9 Months of the Epidemic and Forward Projections

(2014)   NEW ENGLAND JOURNAL OF MEDICINE

Characterizing the likelihood of dengue emergence and detection in naïve populations

(2014) Rebecca C Christofferson et al.   Parasites & Vectors

Towards multiscale modeling of influenza infection

(2013) Lisa N. Murillo et al.   JOURNAL OF THEORETICAL BIOLOGY

A Multi-scale Analysis of Influenza A Virus Fitness Trade-offs due to Temperature-dependent Virus Persistence

(2013) Andreas Handel et al.   PLoS Computational Biology

Extinction thresholds in deterministic and stochastic epidemic models

(2012) Linda J. S. Allen et al.   Journal of Biological Dynamics

A review of mathematical models of influenza A infections within a host or cell culture: lessons learned and challenges ahead

(2011) Catherine AA Beauchemin et al.   BMC PUBLIC HEALTH

BRIDGING SCALES IN THE EVOLUTION OF INFECTIOUS DISEASE LIFE HISTORIES: THEORY

(2011) Troy Day et al.   EVOLUTION

Time-Dependent Infectivity and Flexible Latent and Infectious Periods in Compartmental Models of Plant Disease

(2011) N. J. Cunniffe et al.   PHYTOPATHOLOGY

Influenza A virus infection kinetics: quantitative data and models

(2011) Amber M. Smith et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Lyapunov functional and global asymptotic stability for an infection-age model

(2010) P. Magal et al.   APPLICABLE ANALYSIS

Population Modeling of Influenza A/H1N1 Virus Kinetics and Symptom Dynamics

(2010) L. Canini et al.   JOURNAL OF VIROLOGY

FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model

(2010) Dennis L. Chao et al.   PLoS Computational Biology

Modeling influenza epidemics and pandemics: insights into the future of swine flu (H1N1)

(2009) Brian J Coburn et al.   BMC Medicine

Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings

(2009) C. Fraser et al.   SCIENCE

Time Lines of Infection and Disease in Human Influenza: A Review of Volunteer Challenge Studies

(2008) Fabrice Carrat et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Acute or Chronic? Within‐Host Models with Immune Dynamics, Infection Outcome, and Parasite Evolution

(2008) Samuel Alizon et al.   AMERICAN NATURALIST

Global trends in emerging infectious diseases

(2008) Kate E. Jones et al.   NATURE

Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases

(2008) N MIDEO et al.   TRENDS IN ECOLOGY & EVOLUTION