Transcriptome analysis reveals wingless regulates neural development and signaling genes in the region of wing pigmentation of a polka‐dotted fruit fly

Evolution of wing pigmentation in Drosophila : Diversity, physiological regulation, and cis ‐regulatory evolution

(2020) Shigeyuki Koshikawa   DEVELOPMENT GROWTH & DIFFERENTIATION

Activation of butterfly eyespots by Distal-less is consistent with a reaction-diffusion process

(2019) Heidi Connahs et al.   DEVELOPMENT

Beetle horns evolved from wing serial homologs

(2019) Yonggang Hu et al.   SCIENCE

A phylogenetic examination of host use evolution in the quinaria and testacea groups of Drosophila

(2018) Clare H. Scott Chialvo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic Basis of Melanin Pigmentation in Butterfly Wings

(2017) Linlin Zhang et al.   GENETICS

Genetic Basis of Melanin Pigmentation in Butterfly Wings

(2017) Linlin Zhang et al.   GENETICS

Using Drosophila pigmentation traits to study the mechanisms of cis -regulatory evolution

(2017) Mark Rebeiz et al.   Current Opinion in Insect Science

Genome editing in butterflies reveals that spalt promotes and Distal-less represses eyespot colour patterns

(2016) Linlin Zhang et al.   Nature Communications

Phylogeography of the Subgenus Drosophila (Diptera: Drosophilidae): Evolutionary History of Faunal Divergence between the Old and the New Worlds

(2016) Hiroyuki F. Izumitani et al.   PLoS One

Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty

(2015) William J. Glassford et al.   DEVELOPMENTAL CELL

Enhancer modularity and the evolution of new traits

(2015) Shigeyuki Koshikawa   FLY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Gain ofcis-regulatory activities underlies novel domains ofwinglessgene expression inDrosophila

(2015) Shigeyuki Koshikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Emergence and Diversification of Fly Pigmentation Through Evolution of a Gene Regulatory Module

(2013) L. Arnoult et al.   SCIENCE

Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation

(2012) Heather M Hines et al.   BMC GENOMICS

Acquisition and Diversification of Cladodes: Leaf-Like Organs in the Genus Asparagus

(2012) H. Nakayama et al.   PLANT CELL

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation

(2011) Ralf Janssen et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary novelties

(2010) Günter P. Wagner et al.   CURRENT BIOLOGY

Megalin-dependent Yellow endocytosis restricts melanization in the Drosophila cuticle

(2010) F. Riedel et al.   DEVELOPMENT

Co-option of an anteroposterior head axis patterning system for proximodistal patterning of appendages in early bilaterian evolution

(2010) Derek Lemons et al.   DEVELOPMENTAL BIOLOGY

Caterpillar color patterns are determined by a two-phase melanin gene prepatterning process: new evidence from tan and laccase2

(2010) Ryo Futahashi et al.   EVOLUTION & DEVELOPMENT

Evolution of the Insect Yellow Gene Family

(2010) L. C. Ferguson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Generation of a novel wing colour pattern by the Wingless morphogen

(2010) Thomas Werner et al.   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Deep homology and the origins of evolutionary novelty

(2009) Neil Shubin et al.   NATURE

Differential recruitment of limb patterning genes during development and diversification of beetle horns

(2009) A. P. Moczek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stepwise Modification of a Modular Enhancer Underlies Adaptation in a Drosophila Population

(2009) M. Rebeiz et al.   SCIENCE

The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species

(2008) Sangyun Jeong et al.   CELL

The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila

(2008) Thomas M. Williams et al.   CELL

Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution

(2008) F. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development and evolution of insect pigmentation: Genetic mechanisms and the potential consequences of pleiotropy

(2008) Patricia J. Wittkopp et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY