DeepCPP: a deep neural network based on nucleotide bias information and minimum distribution similarity feature selection for RNA coding potential prediction
出版年份 2020 全文链接
标题
DeepCPP: a deep neural network based on nucleotide bias information and minimum distribution similarity feature selection for RNA coding potential prediction
作者
关键词
-
出版物
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2020-02-26
DOI
10.1093/bib/bbaa039
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- CPPred: coding potential prediction based on the global description of RNA sequence
- (2019) Xiaoxue Tong et al. NUCLEIC ACIDS RESEARCH
- Inflated performance measures in enhancer–promoter interaction-prediction methods
- (2019) Fan Cao et al. NATURE GENETICS
- LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning
- (2018) Cheng Yang et al. BIOINFORMATICS
- LncRNAnet: long non-coding RNA identification using deep learning
- (2018) Junghwan Baek et al. BIOINFORMATICS
- OUP accepted manuscript
- (2018) BRIEFINGS IN BIOINFORMATICS
- Prediction of human protein subcellular localization using deep learning
- (2018) Leyi Wei et al. JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING
- A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential
- (2018) Steven T Hill et al. NUCLEIC ACIDS RESEARCH
- A novel protein encoded by the circular form of the SHPRH gene suppresses glioma tumorigenesis
- (2018) Maolei Zhang et al. ONCOGENE
- Gene2vec: gene subsequence embedding for prediction of mammalian N6-methyladenosine sites from mRNA
- (2018) Quan Zou et al. RNA
- Peptides/Proteins Encoded by Non-coding RNA: A Novel Resource Bank for Drug Targets and Biomarkers
- (2018) Song Zhu et al. Frontiers in Pharmacology
- Novel Role of FBXW7 Circular RNA in Repressing Glioma Tumorigenesis
- (2017) Yibing Yang et al. JNCI-Journal of the National Cancer Institute
- Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis
- (2017) Ivano Legnini et al. MOLECULAR CELL
- A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth
- (2017) Jin-Zhou Huang et al. MOLECULAR CELL
- Classification and function of small open reading frames
- (2017) Juan-Pablo Couso et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
- (2017) Yu-Jian Kang et al. NUCLEIC ACIDS RESEARCH
- XIST RNA: a window into the broader role of RNA in nuclear chromosome architecture
- (2017) K. M. Creamer et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- PCGF3/5–PRC1 initiates Polycomb recruitment in X chromosome inactivation
- (2017) Mafalda Almeida et al. SCIENCE
- Novel Role of FBXW7 Circular RNA in Repressing Glioma Tumorigenesis
- (2017) Yibing Yang et al. JNCI-Journal of the National Cancer Institute
- mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide
- (2016) Akinobu Matsumoto et al. NATURE
- A human microprotein that interacts with the mRNA decapping complex
- (2016) Nadia G D'Lima et al. Nature Chemical Biology
- A novel features ranking metric with application to scalable visual and bioinformatics data classification
- (2016) Quan Zou et al. NEUROCOMPUTING
- A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle
- (2016) B. R. Nelson et al. SCIENCE
- A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance
- (2015) Douglas M. Anderson et al. CELL
- LncRNA Khps1 Regulates Expression of the Proto-oncogene SPHK1 via Triplex-Mediated Changes in Chromatin Structure
- (2015) Anna Postepska-Igielska et al. MOLECULAR CELL
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
- (2014) Aimin Li et al. BMC BIOINFORMATICS
- CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
- (2013) Liguo Wang et al. NUCLEIC ACIDS RESEARCH
- Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
- (2013) Liang Sun et al. NUCLEIC ACIDS RESEARCH
- Human β Cell Transcriptome Analysis Uncovers lncRNAs That Are Tissue-Specific, Dynamically Regulated, and Abnormally Expressed in Type 2 Diabetes
- (2012) Ignasi Morán et al. Cell Metabolism
- Interrelations between the Nucleotide Context of Human Start AUG Codon, N-end Amino Acids of the Encoded Protein and Initiation of Translation
- (2012) Oxana A. Volkova et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
- (2011) M. F. Lin et al. BIOINFORMATICS
- A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
- (2010) Laura Poliseno et al. NATURE
- sORF finder: a program package to identify small open reading frames with high coding potential
- (2009) Kousuke Hanada et al. BIOINFORMATICS
- Long non-coding RNAs: insights into functions
- (2009) Tim R. Mercer et al. NATURE REVIEWS GENETICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started