Unexpected Abundance and Diversity of Phototrophs in Mats from Morphologically Variable Microbialites in Great Salt Lake, Utah

An Ecological Perspective on Dolomite Formation in Great Salt Lake, Utah

(2020) Eric C. Dunham et al.   Frontiers in Earth Science

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

Geologic legacy spanning >90 years explains unique Yellowstone hot spring geochemistry and biodiversity

(2019) Devon Payne et al.   ENVIRONMENTAL MICROBIOLOGY

Characteristics and Evolutionary Analysis of Photosynthetic Gene Clusters on Extrachromosomal Replicons: from Streamlined Plasmids to Chromids

(2019) Yanting Liu et al.   mSystems

The patterns of nitrogen fixation in haloalkaliphilic phototrophic communities of Kulunda Steppe soda lakes (Altai, Russia)

(2019) Olga S Samylina et al.   FEMS MICROBIOLOGY ECOLOGY

Versatile genome assembly evaluation with QUAST-LG

(2018) Alla Mikheenko et al.   BIOINFORMATICS

Phenotypic and genotypic characterisation of an unique indigenous hypersaline unicellular cyanobacterium, Euhalothece sp.nov

(2018) Trisha Mogany et al.   MICROBIOLOGICAL RESEARCH

Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia

(2018) Joany Babilonia et al.   Frontiers in Microbiology

Subsurface processes influence oxidant availability and chemoautotrophic hydrogen metabolism in Yellowstone hot springs

(2018) Melody R. Lindsay et al.   Geobiology

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Gracilimonas halophila sp. nov., isolated from a marine solar saltern

(2017) De-Chen Lu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses

(2017) Vera Thiel et al.   Frontiers in Microbiology

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis

(2017) Daniel Kurth et al.   Scientific Reports

Comparative metagenomics unveils functions and genome features of microbialite-associated communities along a depth gradient

(2016) Aurélien Saghaï et al.   ENVIRONMENTAL MICROBIOLOGY

Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah

(2016) M. R. Lindsay et al.   Geobiology

Wenzhouxiangella sediminis sp. nov., isolated from coastal sediment

(2016) Ling-Yun Guo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology

(2016) Jarone Pinhassi et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing

(2016) Vera Thiel et al.   Frontiers in Microbiology

Microbial and diagenetic steps leading to the mineralisation of Great Salt Lake microbialites

(2016) Aurélie Pace et al.   Scientific Reports

MetaQUAST: evaluation of metagenome assemblies

(2015) Alla Mikheenko et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Early evolution of large micro-organisms with cytological complexity revealed by microanalyses of 3.4 Ga organic-walled microfossils

(2015) K. Sugitani et al.   Geobiology

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential

(2015) Richard Allen White et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada

(2014) J. A. Russell et al.   Geobiology

Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake

(2014) T. L. Hamilton et al.   Geobiology

Diel fluctuations in solute distributions and biogeochemical cycling in a hypersaline microbial mat from Shark Bay, WA

(2014) Anais Pages et al.   MARINE CHEMISTRY

Molecular evidence for an active endogenous microbiome beneath glacial ice

(2013) Trinity L Hamilton et al.   ISME Journal

The Discovery of Stromatolites Developing at 3570 m above Sea Level in a High-Altitude Volcanic Lake Socompa, Argentinean Andes

(2013) María E. Farías et al.   PLoS One

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

(2013) P. M. Shih et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A light-driven sodium ion pump in marine bacteria

(2013) Keiichi Inoue et al.   Nature Communications

Community Structure and Function of High-Temperature Chlorophototrophic Microbial Mats Inhabiting Diverse Geothermal Environments

(2013) Christian G. Klatt et al.   Frontiers in Microbiology

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic and Metabolic Profiling of Nonlithifying and Lithifying Stromatolitic Mats of Highborne Cay, The Bahamas

(2012) Christina L. M. Khodadad et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Prokaryotic and Eukaryotic Community Structure in Field and Cultured Microbialites from the Alkaline Lake Alchichica (Mexico)

(2011) Estelle Couradeau et al.   PLoS One

Biostrome communities and mercury and selenium bioaccumulation in the Great Salt Lake (Utah, USA)

(2011) Wayne A. Wurtsbaugh et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The Great Salt Lake Ecosystem (Utah, USA): long term data and a structural equation approach

(2011) Gary E. Belovsky et al.   Ecosphere

Biogeochemical cycling and microbial diversity in the thrombolitic microbialites of Highborne Cay, Bahamas

(2010) K. L. MYSHRALL et al.   Geobiology

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas

(2009) Jamie S Foster et al.   ISME Journal

The Evolution and Function of Carotenoid Hydroxylases in Arabidopsis

(2009) Joonyul Kim et al.   PLANT AND CELL PHYSIOLOGY

Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems

(2008) Nof Atamna-Ismaeel et al.   ISME Journal

Geological setting of Earth's oldest fossils in the ca. 3.5Ga Dresser Formation, Pilbara Craton, Western Australia

(2008) M VANKRANENDONK et al.   PRECAMBRIAN RESEARCH