Evolution of a supergene that regulates a trans-species social polymorphism

Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion

(2018) Paul Jay et al.   CURRENT BIOLOGY

Revision of the Fire Ants of the Solenopsis saevissima Species-Group (Hymenoptera: Formicidae)

(2018) James P. Pitts et al.   PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON

Multiple large inversions and breakpoint rewiring of gene expression in the evolution of the fire ant social supergene

(2018) Yu-Ching Huang et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Local Inversion Heterozygosity Alters Recombination throughout the Genome

(2018) K. Nicole Crown et al.   CURRENT BIOLOGY

Unexpected patterns of segregation distortion at a selfish supergene in the fire ant Solenopsis invicta

(2018) Kenneth G. Ross et al.   BMC GENETICS

Degenerative expansion of a young supergene

(2018) Eckart Stolle et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complex History and Differentiation Patterns of thet-Haplotype, a Mouse Meiotic Driver

(2017) Reka K. Kelemen et al.   GENETICS

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Chromosome arm-specific patterns of polymorphism associated with chromosomal inversions in the major African malaria vector, Anopheles funestus

(2017) Colince Kamdem et al.   MOLECULAR ECOLOGY

The fire ant social chromosome supergene variant Sb shows low diversity but high divergence from SB

(2017) Rodrigo Pracana et al.   MOLECULAR ECOLOGY

Genetic architecture and balancing selection: the life and death of differentiated variants

(2017) Violaine Llaurens et al.   MOLECULAR ECOLOGY

Tracing the origin and evolution of supergene mimicry in butterflies

(2017) Wei Zhang et al.   Nature Communications

Complex History and Differentiation Patterns of thet-Haplotype, a Mouse Meiotic Driver

(2017) Reka K. Kelemen et al.   GENETICS

Evolution of long centromeres in fire ants

(2016) Yu-Ching Huang et al.   BMC EVOLUTIONARY BIOLOGY

The status of supergenes in the 21st century: recombination suppression in Batesian mimicry and sex chromosomes and other complex adaptations

(2015) Deborah Charlesworth   Evolutionary Applications

A guide to genome-wide association analysis and post-analytic interrogation

(2015) Eric Reed et al.   STATISTICS IN MEDICINE

ALLMAPS: robust scaffold ordering based on multiple maps

(2015) Haibao Tang et al.   GENOME BIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

Supergenes and Complex Phenotypes

(2014) Tanja Schwander et al.   CURRENT BIOLOGY

Supergenes and their role in evolution

(2014) M J Thompson et al.   HEREDITY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Did the fire ant supergene evolve selfishly or socially?

(2013) Yu-Ching Huang et al.   BIOESSAYS

TESTING THE MUSEUM VERSUS CRADLE TROPICAL BIOLOGICAL DIVERSITY HYPOTHESIS: PHYLOGENY, DIVERSIFICATION, AND ANCESTRAL BIOGEOGRAPHIC RANGE EVOLUTION OF THE ANTS

(2013) Corrie S. Moreau et al.   EVOLUTION

TIGRA: A targeted iterative graph routing assembler for breakpoint assembly

(2013) K. Chen et al.   GENOME RESEARCH

PAMLX: A Graphical User Interface for PAML

(2013) B. Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular and social regulation of worker division of labour in fire ants

(2013) Fabio Manfredini et al.   MOLECULAR ECOLOGY

A Y-like social chromosome causes alternative colony organization in fire ants

(2013) John Wang et al.   NATURE

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

THE EVOLUTION OF XY RECOMBINATION: SEXUALLY ANTAGONISTIC SELECTION VERSUS DELETERIOUS MUTATION LOAD

(2012) Christine Grossen et al.   EVOLUTION

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Molecular Evolution in Nonrecombining Regions of the Drosophila melanogaster Genome

(2012) José L. Campos et al.   Genome Biology and Evolution

Male reproductive fitness and queen polyandry are linked to variation in the supergene Gp-9 in the fire ant Solenopsis invicta

(2012) L. P. Lawson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Effects of Inversions on Within- and Between-Species Recombination and Divergence

(2011) Laurie S. Stevison et al.   Genome Biology and Evolution

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Mitochondrial genome evolution in fire ants (Hymenoptera: Formicidae)

(2010) Dietrich Gotzek et al.   BMC EVOLUTIONARY BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A New Method for Distinguishing Colony Social Forms of the Fire Ant,Solenopsis invicta

(2010) DeWayne Shoemaker et al.   JOURNAL OF INSECT SCIENCE

Evolution of Gene Expression in Fire Ants: The Effects of Developmental Stage, Caste, and Species

(2010) L. Ometto et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Chromosome polymorphisms in natural populations of the South American grasshopper Sinipta dalmani

(2008) Maria Isabel Remis   GENETICS AND MOLECULAR BIOLOGY

Estimation of the number of founders of an invasive pest insect population: the fire ant Solenopsis invicta in the USA

(2008) K. G Ross et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES