Genome-wide analyses reveal the role of noncoding variation in complex traits during rice domestication

Genome-wide profiling of long non-coding RNAs from tomato and a comparison with mRNAs associated with the regulation of fruit ripening

(2018) Minghui Wang et al.   BMC PLANT BIOLOGY

Genome-wide association study of rice grain width variation

(2018) Xiao-Ming Zheng et al.   GENOME

A global transcriptional network connecting noncoding mutations to changes in tumor gene expression

(2018) Wei Zhang et al.   NATURE GENETICS

Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice

(2018) Ying Wang et al.   Nature Communications

Erratum: Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood

(2017) Julia Joung et al.   NATURE

How do lncRNAs regulate transcription?

(2017) Yicheng Long et al.   Science Advances

Widespread and Adaptive Alterations in Genome-Wide Gene Expression Associated with Ecological Divergence of TwoOryzaSpecies

(2015) Jie Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits

(2015) Huan Wang et al.   PLANT JOURNAL

Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system

(2015) Tiffany B. Taylor et al.   SCIENCE

LncReg: a reference resource for lncRNA-associated regulatory networks

(2015) Zhong Zhou et al.   Database-The Journal of Biological Databases and Curation

The evolution of lncRNA repertoires and expression patterns in tetrapods

(2014) Anamaria Necsulea et al.   NATURE

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

A Bountiful Harvest: Genomic Insights into Crop Domestication Phenotypes

(2013) Kenneth M. Olsen et al.   Annual Review of Plant Biology

Genetic diversity and classification of Oryza sativa with emphasis on Chinese rice germplasm

(2013) C-H Wang et al.   HEREDITY

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Domestication and geographic origin ofOryza sativain China: insights from multilocus analysis of nucleotide variation ofO. sativaandO. rufipogon

(2012) Xin Wei et al.   MOLECULAR ECOLOGY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response

(2012) Ritesh Kumar et al.   PLANT MOLECULAR BIOLOGY

Transcriptomes of the Anther Sporophyte: Availability and Uses

(2011) M.-D. Huang et al.   PLANT AND CELL PHYSIOLOGY

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

(2010) R. A. Swanson-Wagner et al.   GENOME RESEARCH

Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara)

(2010) XIAO-MING ZHENG et al.   MOLECULAR ECOLOGY

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator

(2010) F.-F. Fu et al.   PLANT PHYSIOLOGY

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Genes and Mutations Underlying Domestication Transitions in Grasses

(2009) T. Sang   PLANT PHYSIOLOGY

Natural Variation in Gene Expression Between Wild and Weedy Populations of Helianthus annuus

(2008) Z. Lai et al.   GENETICS

Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures

(2008) Ran Blekhman et al.   PLoS Genetics