Genome-Wide Distribution, Expression and Function Analysis of the U-Box Gene Family in Brassica oleracea L.

Os BZR 1 turnover mediated by Os SK 22‐regulated U‐box E3 ligase Os PUB 24 in rice BR response

(2019) Hye Jo Min et al.   PLANT JOURNAL

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms

(2018) Ren Ren et al.   Molecular Plant

CGPS: A machine learning-based approach integrating multiple gene set analysis tools for better prioritization of biologically relevant pathways

(2018) Chen Ai et al.   Journal of Genetics and Genomics

Overexpression of Arabidopsis ubiquitin ligase AtPUB46 enhances tolerance to drought and oxidative stress

(2018) Guy Adler et al.   PLANT SCIENCE

AtPUB48 E3 ligase plays a crucial role in the thermotolerance of Arabidopsis

(2018) Lu Peng et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genome-Wide Identification and Analysis of U-Box E3 Ubiquitin–Protein Ligase Gene Family in Banana

(2018) Huigang Hu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

News from the PUB: plant U-box type E3 ubiquitin ligases

(2017) Marco Trujillo   JOURNAL OF EXPERIMENTAL BOTANY

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1

(2016) Dong Hye Seo et al.   PLANT CELL

EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes

(2016) Yiping Wang et al.   PLANT PHYSIOLOGY

The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity

(2015) Jing Wang et al.   BMC PLANT BIOLOGY

Genome-wide survey and expression analysis of the PUB family in Chinese cabbage (Brassica rapa ssp. pekinesis)

(2015) Cheng Wang et al.   MOLECULAR GENETICS AND GENOMICS

New players in ABA signaling: identification of PUB12/13 involved in degradation of ABA co-receptor ABI1

(2015) Xuan Ma et al.   Science China-Life Sciences

Degradation of the ABA co-receptor ABI1 by PUB12/13 U-box E3 ligases

(2015) Lingyao Kong et al.   Nature Communications

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

An E4 Ligase Facilitates Polyubiquitination of Plant Immune Receptor Resistance Proteins in Arabidopsis

(2014) Y. Huang et al.   PLANT CELL

nhmmer: DNA homology search with profile HMMs

(2013) T. J. Wheeler et al.   BIOINFORMATICS

Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus

(2013) Cunmin Qu et al.   JOURNAL OF EXPERIMENTAL BOTANY

ABA control of plant macroelement membrane transport systems in response to water deficit and high salinity

(2013) Yuriko Osakabe et al.   NEW PHYTOLOGIST

WD40 proteins propel cellular networks

(2010) Christian U. Stirnimann et al.   TRENDS IN BIOCHEMICAL SCIENCES

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

RING Domain E3 Ubiquitin Ligases

(2009) Raymond J. Deshaies et al.   Annual Review of Biochemistry

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates

(2009) Da-Peng Wang et al.   Biology Direct

Correlation Between Ka/Ks and Ks is Related to Substitution Model and Evolutionary Lineage

(2009) Jun Li et al.   JOURNAL OF MOLECULAR EVOLUTION

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Biochemical function of typical and variantArabidopsis thalianaU-box E3 ubiquitin-protein ligases

(2008) Jakob Wiborg et al.   BIOCHEMICAL JOURNAL

Gene duplications, robustness and evolutionary innovations

(2008) Andreas Wagner   BIOESSAYS

Classification, Expression Pattern, and E3 Ligase Activity Assay of Rice U-Box-Containing Proteins

(2008) Li-Rong Zeng et al.   Molecular Plant

Arabidopsis PUB22 and PUB23 Are Homologous U-Box E3 Ubiquitin Ligases That Play Combinatory Roles in Response to Drought Stress

(2008) S. K. Cho et al.   PLANT CELL

Interactions between the S-Domain Receptor Kinases and AtPUB-ARM E3 Ubiquitin Ligases Suggest a Conserved Signaling Pathway in Arabidopsis

(2008) M. A. Samuel et al.   PLANT PHYSIOLOGY