Finding and extending ancient simple sequence repeat-derived regions in the human genome

Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals

(2018) Giulia I. M. Pasquesi et al.   Nature Communications

Impact and insights from ancient repetitive elements in plant genomes

(2016) Florian Maumus et al.   CURRENT OPINION IN PLANT BIOLOGY

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

(2015) Tugce Bilgin Sonay et al.   GENOME RESEARCH

Abundant contribution of short tandem repeats to gene expression variation in humans

(2015) Melissa Gymrek et al.   NATURE GENETICS

The landscape of human STR variation

(2014) Thomas Willems et al.   GENOME RESEARCH

Large-scale analysis of tandem repeat variability in the human genome

(2014) Jorge Duitama et al.   NUCLEIC ACIDS RESEARCH

Inference of Transposable Element Ancestry

(2014) Aaron C. Wacholder et al.   PLoS Genetics

Microsatellite Interruptions Stabilize Primate Genomes and Exist as Population-Specific Single Nucleotide Polymorphisms within Individual Human Genomes

(2014) Guruprasad Ananda et al.   PLoS Genetics

Microsatellite Tandem Repeats Are Abundant in Human Promoters and Are Associated with Regulatory Elements

(2013) Sterling Sawaya et al.   PLoS One

Mature Microsatellites: Mechanisms Underlying Dinucleotide Microsatellite Mutational Biases in Human Cells

(2013) Beverly A. Baptiste et al.   G3-Genes Genomes Genetics

Transposable Elements Are a Significant Contributor to Tandem Repeats in the Human Genome

(2012) Musaddeque Ahmed et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Distinct Mutational Behaviors Differentiate Short Tandem Repeats from Microsatellites in the Human Genome

(2012) Guruprasad Ananda et al.   Genome Biology and Evolution

A direct characterization of human mutation based on microsatellites

(2012) James X Sun et al.   NATURE GENETICS

Dfam: a database of repetitive DNA based on profile hidden Markov models

(2012) Travis J. Wheeler et al.   NUCLEIC ACIDS RESEARCH

A matter of life or death: How microsatellites emerge in and vanish from the human genome

(2011) Y. D. Kelkar et al.   GENOME RESEARCH

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

(2011) A. P. Jason de Koning et al.   PLoS Genetics

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats

(2010) Yogeshwar D. Kelkar et al.   Genome Biology and Evolution

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability

(2009) M. D. Vinces et al.   SCIENCE

Identification of repeat structure in large genomes using repeat probability clouds

(2008) Wanjun Gu et al.   ANALYTICAL BIOCHEMISTRY

Genome analysis of the platypus reveals unique signatures of evolution

(2008) Wesley C. Warren et al.   NATURE