Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system
出版年份 2019 全文链接
标题
Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system
作者
关键词
-
出版物
eLife
Volume 8, Issue -, Pages -
出版商
eLife Sciences Publications, Ltd
发表日期
2019-12-17
DOI
10.7554/elife.45833
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Disease management at the wildlife-livestock interface: using whole-genome sequencing to study the role of elk in Mycobacterium bovis transmission in Michigan, USA
- (2019) L.C.M. Salvador et al. MOLECULAR ECOLOGY
- Genotyping and Whole-Genome Sequencing to Identify Tuberculosis Transmission to Pediatric Patients in British Columbia, Canada, 2005–2014
- (2018) Jennifer L Guthrie et al. JOURNAL OF INFECTIOUS DISEASES
- A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study
- (2018) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study
- (2018) Rana Jajou et al. PLoS One
- Identifying genotype specific elevated-risk areas and associated herd risk factors for bovine tuberculosis spread in British cattle
- (2018) R.J. Orton et al. Epidemics
- Bayesian reconstruction of transmission within outbreaks using genomic variants
- (2018) Nicola De Maio et al. PLoS Computational Biology
- Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data
- (2018) Benjamin Sobkowiak et al. BMC GENOMICS
- The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology
- (2018) Conor J. Meehan et al. EBioMedicine
- Patterns and Processes of Mycobacterium bovis Evolution Revealed by Phylogenomic Analyses
- (2017) José S.L. Patané et al. Genome Biology and Evolution
- Transmission of multidrug-resistant Mycobacterium tuberculosis in Shanghai, China: a retrospective observational study using whole-genome sequencing and epidemiological investigation
- (2017) Chongguang Yang et al. LANCET INFECTIOUS DISEASES
- Abundance of badgers (Meles meles) in England and Wales
- (2017) Johanna Judge et al. Scientific Reports
- Use of genomics to track bovine tuberculosis transmission
- (2016) R.R. KAO et al. REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES
- Bovine TB surveillance in Great Britain in 2014
- (2016) J. R. Lawes et al. VETERINARY RECORD
- SpoTyping: fast and accurate in silico Mycobacterium spoligotyping from sequence reads
- (2016) Eryu Xia et al. Genome Medicine
- Descriptive Epidemiology and Whole Genome Sequencing Analysis for an Outbreak of Bovine Tuberculosis in Beef Cattle and White-Tailed Deer in Northwestern Minnesota
- (2016) Linda Glaser et al. PLoS One
- Epidemiology and control ofMycobacterium bovisinfection in brushtail possums (Trichosurus vulpecula), the primary wildlife host of bovine tuberculosis in New Zealand
- (2015) G Nugent et al. NEW ZEALAND VETERINARY JOURNAL
- New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation
- (2015) Nicola De Maio et al. PLoS Genetics
- Efficient Bayesian inference under the structured coalescent
- (2014) Timothy G. Vaughan et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Supersize me: how whole-genome sequencing and big data are transforming epidemiology
- (2014) Rowland R. Kao et al. TRENDS IN MICROBIOLOGY
- Association between spoligotype-VNTR types and virulence ofMycobacterium bovisin cattle
- (2014) Sergio Garbaccio et al. Virulence
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
- (2014) Remco Bouckaert et al. PLoS Computational Biology
- Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data
- (2013) Josephine M Bryant et al. BMC INFECTIOUS DISEASES
- Long-term temporal trends and estimated transmission rates for Mycobacterium bovis infection in an undisturbed high-density badger (Meles meles) population
- (2013) R. J. DELAHAY et al. EPIDEMIOLOGY AND INFECTION
- Mycobacterium bovis (bovine tuberculosis) infection in North American wildlife: current status and opportunities for mitigation of risks of further infection in wildlife populations
- (2013) R. S. MILLER et al. EPIDEMIOLOGY AND INFECTION
- Field-Isolated Genotypes of Mycobacterium bovis Vary in Virulence and Influence Case Pathology but Do Not Affect Outbreak Size
- (2013) David M. Wright et al. PLoS One
- Comparison of bovine tuberculosis recurrence in Irish herds between 1998 and 2008
- (2013) M.J. Gallagher et al. PREVENTIVE VETERINARY MEDICINE
- A restatement of the natural science evidence base relevant to the control of bovine tuberculosis in Great Britain
- (2013) H. C. J. Godfray et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Spatial relationships between Eurasian badgers (Meles meles) and cattle infected with Mycobacterium bovis in Northern Spain
- (2013) Ana Balseiro et al. VETERINARY JOURNAL
- Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study
- (2013) Andreas Roetzer et al. PLOS MEDICINE
- After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
- (2012) A. Namouchi et al. GENOME RESEARCH
- Interpretation of nonlinear relationships between process variables by use of random forests
- (2012) Lidia Auret et al. MINERALS ENGINEERING
- Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics
- (2012) Guy Baele et al. MOLECULAR BIOLOGY AND EVOLUTION
- Geographical association between the genotype of bovine tuberculosis in found dead badgers and in cattle herds
- (2012) A. V. Goodchild et al. VETERINARY RECORD
- Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations
- (2012) Roman Biek et al. PLoS Pathogens
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Mycobacterial PE/PPE Proteins at the Host-Pathogen Interface
- (2011) Samantha L. Sampson Clinical & Developmental Immunology
- Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
- (2011) Jennifer L. Gardy et al. NEW ENGLAND JOURNAL OF MEDICINE
- Local Cattle and Badger Populations Affect the Risk of Confirmed Tuberculosis in British Cattle Herds
- (2011) Flavie Vial et al. PLoS One
- Recurrence of bovine tuberculosis breakdowns in Great Britain: Risk factors and prediction
- (2011) K. Karolemeas et al. PREVENTIVE VETERINARY MEDICINE
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses
- (2010) C. Firth et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Performance of TB immunodiagnostic tests in Eurasian badgers (Meles meles) of different ages and the influence of duration of infection on serological sensitivity
- (2009) Mark A Chambers et al. BMC Veterinary Research
- Bayesian Phylogeography Finds Its Roots
- (2009) Philippe Lemey et al. PLoS Computational Biology
- A working guide to boosted regression trees
- (2008) J. Elith et al. JOURNAL OF ANIMAL ECOLOGY
- Male-biased Movement in a High-density Population of the Eurasian Badger (Meles meles)
- (2008) David W. Macdonald et al. JOURNAL OF MAMMALOGY
- Estimates for local and movement-based transmission of bovine tuberculosis in British cattle
- (2008) D. M Green et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started