Soil depth and grassland origin cooperatively shape microbial community co‐occurrence and function

Distinct communities of Cercozoa at different soil depths in a temperate agricultural field

(2019) Florine Degrune et al.   FEMS MICROBIOLOGY ECOLOGY

Editorial special issue: the soil, the seed, the microbes and the plant

(2018) Eric B. Nelson et al.   PLANT AND SOIL

Alive and kicking: Why dormant soil microorganisms matter

(2018) Rainer Georg Joergensen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Subsoil arbuscular mycorrhizal fungal communities in arable soil differ from those in topsoil

(2018) Moisés A. Sosa-Hernández et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root litter decomposition slows with soil depth

(2018) Caitlin E. Hicks Pries et al.   SOIL BIOLOGY & BIOCHEMISTRY

How, When, and Where Relic DNA Affects Microbial Diversity

(2018) J. T. Lennon et al.   mBio

Atmosphere–soil carbon transfer as a function of soil depth

(2018) Jérôme Balesdent et al.   NATURE

Microbial community structure and functions differ between native and novel (exotic-dominated) grassland ecosystems in an 8-year experiment

(2018) Aleksandra Checinska Sielaff et al.   PLANT AND SOIL

Location, Root Proximity, and Glyphosate-Use History Modulate the Effects of Glyphosate on Fungal Community Networks of Wheat

(2017) Daniel C. Schlatter et al.   MICROBIAL ECOLOGY

Increased drought frequency alters the optimal management strategy of an endangered plant

(2016) Holly L. Bernardo et al.   BIOLOGICAL CONSERVATION

Biotic Regulation of CO2 Uptake–Climate Responses: Links to Vegetation Properties

(2016) H. Wayne Polley et al.   ECOSYSTEMS

Spatial Distribution of Fungal Communities in an Arable Soil

(2016) Julia Moll et al.   PLoS One

A modified incubation method reduces analytical variation of soil hydrolase assays

(2015) Sarah K. Hargreaves et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Pulse-drought atop press-drought: unexpected plant responses and implications for dryland ecosystems

(2015) David L. Hoover et al.   OECOLOGIA

A theory for species co-occurrence in interaction networks

(2015) Kévin Cazelles et al.   Theoretical Ecology

Prokaryotes in Subsoil—Evidence for a Strong Spatial Separation of Different Phyla by Analysing Co-occurrence Networks

(2015) Marie Uksa et al.   Frontiers in Microbiology

Biodiversity, photosynthetic mode, and ecosystem services differ between native and novel ecosystems

(2014) Leanne M. Martin et al.   OECOLOGIA

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Invaded grassland communities have altered stability-maintenance mechanisms but equal stability compared to native communities

(2013) Brian J. Wilsey et al.   ECOLOGY LETTERS

Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants

(2013) Feng Ju et al.   ENVIRONMENTAL MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Simple plant traits explain functional group diversity decline in novel grassland communities of Texas

(2012) Pedram P. Daneshgar et al.   PLANT ECOLOGY

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Three-dimensional mapping of soil organic matter content using soil type–specific depth functions

(2011) B. Kempen et al.   GEODERMA

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Biodiversity, phenology and temporal niche differences between native- and novel exotic-dominated grasslands

(2011) Brian J. Wilsey et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies

(2011) Donovan P. German et al.   SOIL BIOLOGY & BIOCHEMISTRY

A direct comparison of the consequences of plant genotypic and species diversity on communities and ecosystem function

(2010) Susan C. Cook-Patton et al.   ECOLOGY

Vertical distribution of fungal communities in tallgrass prairie soil

(2010) Ari Jumpponen et al.   MYCOLOGIA

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Individualistic vs community modelling of species distributions under climate change

(2009) Andrés Baselga et al.   ECOGRAPHY

Biodiversity maintenance mechanisms differ between native and novel exotic-dominated communities

(2009) Brian J. Wilsey et al.   ECOLOGY LETTERS

Mapping continuous depth functions of soil carbon storage and available water capacity

(2009) B.P. Malone et al.   GEODERMA

Contingent productivity responses to more extreme rainfall regimes across a grassland biome

(2009) JANA L. HEISLER-WHITE et al.   GLOBAL CHANGE BIOLOGY

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Soil carbon and nitrogen mineralization: Theory and models across scales

(2009) Stefano Manzoni et al.   SOIL BIOLOGY & BIOCHEMISTRY

Predicting Risk of Habitat Conversion in Native Temperate Grasslands

(2008) SCOTT E. STEPHENS et al.   CONSERVATION BIOLOGY

Management of novel ecosystems: are novel approaches required?

(2008) Timothy R Seastedt et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Root decisions

(2008) ANGELA HODGE   PLANT CELL AND ENVIRONMENT