Statistical inference in ensemble modeling of cellular metabolism

Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations

(2018) Tuure Hameri et al.   METABOLIC ENGINEERING

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models

(2017) Meric Ataman et al.   PLoS Computational Biology

lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites

(2017) Meric Ataman et al.   PLoS Computational Biology

Ten Simple Rules for Effective Statistical Practice

(2016) Robert E. Kass et al.   PLoS Computational Biology

A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions

(2015) Pedro Saa et al.   PLoS Computational Biology

Kinetic models in industrial biotechnology – Improving cell factory performance

(2014) Joachim Almquist et al.   METABOLIC ENGINEERING

Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints

(2013) Anirikh Chakrabarti et al.   Biotechnology Journal

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011

(2011) J. D. Orth et al.   Molecular Systems Biology

Modeling of uncertainties in biochemical reactions

(2010) Ljubiša Mišković et al.   BIOTECHNOLOGY AND BIOENGINEERING

How does multiple testing correction work?

(2009) William S Noble   NATURE BIOTECHNOLOGY

Ensemble Modeling of Metabolic Networks

(2008) Linh M. Tran et al.   BIOPHYSICAL JOURNAL