Training Population Optimization for Genomic Selection

Multienvironment Models Increase Prediction Accuracy of Complex Traits in Advanced Breeding Lines of Rice

(2018) Eliana Monteverde et al.   CROP SCIENCE

Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits

(2018) Jiabo Wang et al.   HEREDITY

Optimising Genomic Selection in Wheat: Effect of Marker Density, Population Size and Population Structure on Prediction Accuracy

(2018) Adam Norman et al.   G3-Genes Genomes Genetics

Genome-Wide Association Study Using Historical Breeding Populations Discovers Genomic Regions Involved in High-Quality Rice

(2018) Gastón Quero et al.   Plant Genome

Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality

(2018) Bettina Lado et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of within- and among-family genomic prediction in triticale

(2017) Tobias Würschum et al.   PLANT BREEDING

Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations

(2017) R. Rincent et al.   THEORETICAL AND APPLIED GENETICS

Strategies for Selecting Crosses Using Genomic Prediction in Two Wheat Breeding Programs

(2017) Bettina Lado et al.   Plant Genome

Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program

(2017) Elliot L. Heffner et al.   Plant Genome

Modeling Genotype × Environment Interaction for Genomic Selection with Unbalanced Data from a Wheat Breeding Program

(2016) Bettina Lado et al.   CROP SCIENCE

Introduction to a Special Issue on Genotype by Environment Interaction

(2016) Natalia de Leon et al.   CROP SCIENCE

Adding Genetically Distant Individuals to Training Populations Reduces Genomic Prediction Accuracy in Barley

(2015) Aaron J. Lorenz et al.   CROP SCIENCE

Prediction of malting quality traits in barley based on genome-wide marker data to assess the potential of genomic selection

(2015) Malthe Schmidt et al.   THEORETICAL AND APPLIED GENETICS

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

(2015) Marco Lopez-Cruz et al.   G3-Genes Genomes Genetics

Evaluation of Genomic Selection Training Population Designs and Genotyping Strategies in Plant Breeding Programs Using Simulation

(2014) John M. Hickey et al.   CROP SCIENCE

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

A SUPER Powerful Method for Genome Wide Association Study

(2014) Qishan Wang et al.   PLoS One

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Predicting the future of plant breeding: complementing empirical evaluation with genetic prediction

(2014) Mark Cooper et al.   Crop & Pasture Science

Genomic BLUP Decoded: A Look into the Black Box of Genomic Prediction

(2013) D. Habier et al.   GENETICS

Genomic Predictability of Interconnected Biparental Maize Populations

(2013) C. Riedelsheimer et al.   GENETICS

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

Field high-throughput phenotyping: the new crop breeding frontier

(2013) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

Resource Allocation for Maximizing Prediction Accuracy and Genetic Gain of Genomic Selection in Plant Breeding: A Simulation Experiment

(2013) Aaron J. Lorenz   G3-Genes Genomes Genetics

Accuracy of Genomewide Selection for Different Traits with Constant Population Size, Heritability, and Number of Markers

(2013) Emily Combs et al.   Plant Genome

Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six-Row Barley

(2012) A. J. Lorenz et al.   CROP SCIENCE

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

The Effect of Linkage Disequilibrium and Family Relationships on the Reliability of Genomic Prediction

(2012) Y. C. J. Wientjes et al.   GENETICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)

(2012) R. Rincent et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Reliability of direct genomic values for animals with different relationships within and to the reference population

(2011) M. Pszczola et al.   JOURNAL OF DAIRY SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Genomic Selection Using Low-Density Marker Panels

(2009) D. Habier et al.   GENETICS

Genomic selection in admixed and crossbred populations 1

(2009) A. Toosi et al.   JOURNAL OF ANIMAL SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Performance of Genomic Selection in Mice

(2008) A. Legarra et al.   GENETICS

Genomic selection using different marker types and densities

(2008) T. R. Solberg et al.   JOURNAL OF ANIMAL SCIENCE

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

The impact of genetic relationship information on genome-assisted breeding values

(2007) D. Habier et al.   GENETICS